C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spinster homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045303 Spns2-001 ENSMUSG00000040447 10090 - 11:72451638-72489904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045303
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045303 14.806±1.96 3.642±0.23 9.191±1.04 16.676±1.01 23.571±5.43 9.191±0.57 5.133±0.32 39.021±1.56 8.356±3.81 43.301±7.44 20.002±7.51 22.384±2.55 17.007±4.44 4.870±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CS CIL_0003CS_0002 CGP 11:72451638-72550506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001782 IMP B cell homeostasis
GO:0002260 IMP lymphocyte homeostasis
GO:0002920 IMP regulation of humoral immune response
GO:0003376 IMP sphingosine-1-phosphate signaling pathway
GO:0005575 ND cellular_component
GO:0006665 IMP sphingolipid metabolic process
GO:0006869 IEA lipid transport
GO:0016021 IEA integral component of membrane
GO:0043029 IMP T cell homeostasis
GO:0046624 IDA sphingolipid transporter activity
GO:0048073 IMP regulation of eye pigmentation
GO:0048535 IMP lymph node development
GO:0055085 IEA transmembrane transport
GO:0060348 IMP bone development
GO:0072676 IMP lymphocyte migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254718 MYBBP1A-001 protein_coding Homo_sapiens 0 213
ENST00000329078 SPNS2-001 protein_coding Homo_sapiens 0 2233
ENST00000381556 MYBBP1A-201 protein_coding Homo_sapiens 4e-27 128
ENST00000570641 SPNS2-008 retained_intron Homo_sapiens 0 233
ENST00000570979 SPNS2-002 retained_intron Homo_sapiens 0 309
ENST00000571368 MYBBP1A-006 retained_intron Homo_sapiens 0 213
ENST00000571386 SPNS2-003 protein_coding Homo_sapiens 0 555
ENST00000571668 SPNS2-005 retained_intron Homo_sapiens 0 601
ENST00000573106 SPNS2-006 retained_intron Homo_sapiens 0 228
ENST00000573116 MYBBP1A-002 protein_coding Homo_sapiens 5e-26 124
ENST00000573723 MYBBP1A-009 protein_coding Homo_sapiens 0.0000008 58
ENST00000573990 SPNS2-007 retained_intron Homo_sapiens 0 233
ENST00000574934 MYBBP1A-007 retained_intron Homo_sapiens 0 206
ENST00000576635 SPNS2-004 retained_intron Homo_sapiens 0 435

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