C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045971 Chrnb1-001 ENSMUSG00000041189 10090 - 11:69784036-69795943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045971
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045971 3.115±0.60 0.527±0.17 6.961±3.07 3.321±1.13 1.629±0.83 1.800±0.44 2.421±0.54 0.262±0.14 10.672±1.40 13.397±1.25 2.446±1.46 3.773±1.86 0.106±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001941 IEA postsynaptic membrane organization
GO:0003009 IEA skeletal muscle contraction
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006812 IGI cation transport
GO:0006936 IEA muscle contraction
GO:0007165 IEA signal transduction
GO:0007271 IEA synaptic transmission, cholinergic
GO:0007274 IEA neuromuscular synaptic transmission
GO:0015267 IEA channel activity
GO:0015276 IEA ligand-gated ion channel activity
GO:0015464 IEA acetylcholine receptor activity
GO:0030054 IEA cell junction
GO:0035095 IEA behavioral response to nicotine
GO:0042166 IMP acetylcholine binding
GO:0042391 IGI regulation of membrane potential
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0048747 IEA muscle fiber development
GO:0050877 IEA neurological system process
GO:0055085 IEA transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306071 CHRNB1-001 protein_coding Homo_sapiens 0 1618
ENST00000471834 SYNE1-018 retained_intron Homo_sapiens 0.00000006 66
ENST00000536404 CHRNB1-002 protein_coding Homo_sapiens 0 1456
ENST00000570557 CHRNB1-007 protein_coding Homo_sapiens 0 549
ENST00000572857 CHRNB1-004 protein_coding Homo_sapiens 0 244
ENST00000573209 CHRNB1-003 retained_intron Homo_sapiens 0 852
ENST00000575379 CHRNB1-008 protein_coding Homo_sapiens 0 326
ENST00000576360 CHRNB1-006 protein_coding Homo_sapiens 0 691

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