C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cholinergic receptor, nicotinic, beta 1 (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576360 CHRNB1-006 ENSG00000170175 9606 + 17:7445531-7457315 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyOvaryPlacentaENST00000576360
Transcript ID Colon Kidney Ovary Placenta
ENST00000576360 0.326±0.00 0.578±0.00 14.948±0.00 9.970±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ST CIL_0006ST_0002 CGP 17:7438273-7457707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0045211 IEA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045971 Chrnb1-001 protein_coding Mus_musculus 0 691
ENSMUST00000154816 Chrnb1-003 retained_intron Mus_musculus 0 477
ENSMUST00000147791 Chrnb1-002 processed_transcript Mus_musculus 0 424

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