C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046290 Lpcat2-001 ENSMUSG00000033192 10090 + 8:92855350-92919279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046290 2.393±2.03 2.652±1.02 1.450±0.44 1.034±0.40 2.339±0.91 4.076±2.24 0.354±0.10 0.617±0.13 0.953±0.66 2.477±0.68 0.108±0.05 5.513±2.23 0.532±0.18 0.111±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722
CIL_0007WY CIL_0007WY_0002 VISTA 8:92348089-92949598
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0005P6 CIL_0005P6_0002 CGP 8:92827328-92919279
CIL_0000PT CIL_0000PT_0002 CGP 8:92855350-92919279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003841 IEA 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005509 IEA calcium ion binding
GO:0005783 IDA endoplasmic reticulum
GO:0005795 IDA Golgi stack
GO:0005811 IEA lipid particle
GO:0006663 IDA platelet activating factor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0036151 IEA phosphatidylcholine acyl-chain remodeling
GO:0047184 IDA 1-acylglycerophosphocholine O-acyltransferase activity
GO:0047192 IDA 1-alkylglycerophosphocholine O-acetyltransferase activity
GO:0061024 IDA membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262134 LPCAT2-001 protein_coding Homo_sapiens 0 1637
ENST00000563095 LPCAT2-005 retained_intron Homo_sapiens 0 475
ENST00000564084 LPCAT2-004 protein_coding Homo_sapiens 0 527
ENST00000566375 LPCAT2-006 retained_intron Homo_sapiens 0 243
ENST00000566911 LPCAT2-003 retained_intron Homo_sapiens 0 246
ENST00000566915 LPCAT2-002 retained_intron Homo_sapiens 0 992
ENST00000615823 LPCAT2-201 protein_coding Homo_sapiens 0 990

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