C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046975 Pcgf3-001 ENSMUSG00000033623 10090 + 5:108461232-108506976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046975
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046975 4.799±1.72 3.845±0.86 6.209±0.19 6.370±5.10 3.902±0.94 7.739±1.33 3.661±0.20 4.688±0.35 3.061±0.92 6.637±0.48 4.345±1.08 6.694±1.64 6.290±3.00 1.745±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CG CIL_0006CG_0002 CGP 5:108441054-108506976
CIL_0006LT CIL_0006LT_0002 CGP 5:108461232-108550024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000362003 PCGF3-001 protein_coding Homo_sapiens 0 1284
ENST00000400151 PCGF3-009 protein_coding Homo_sapiens 0 446
ENST00000419774 PCGF3-007 protein_coding Homo_sapiens 0 320
ENST00000427463 PCGF3-012 protein_coding Homo_sapiens 0 501
ENST00000430644 PCGF3-003 nonsense_mediated_decay Homo_sapiens 0 809
ENST00000433814 PCGF3-005 protein_coding Homo_sapiens 0 499
ENST00000440452 PCGF3-002 nonsense_mediated_decay Homo_sapiens 0 830
ENST00000470161 PCGF3-004 protein_coding Homo_sapiens 0 1210
ENST00000475288 PCGF3-006 retained_intron Homo_sapiens 0 302
ENST00000482726 PCGF3-008 processed_transcript Homo_sapiens 0 446
ENST00000484141 PCGF3-011 retained_intron Homo_sapiens 0 531
ENST00000505655 PCGF3-201 protein_coding Homo_sapiens 0 996
ENST00000620529 PCGF3-202 protein_coding Homo_sapiens 0 507

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