C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: otoancorin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047025 Otoa-001 ENSMUSG00000034990 10090 + 7:121083322-121163097 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000047025
Transcript ID Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000047025 0.108±0.02 0.020±0.00 0.020±0.00 0.014±0.00 0.097±0.00 0.003±0.00 0.019±0.00 0.032±0.01 1.099±0.99 0.045±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RG CIL_0008RG_0002 VISTA 7:120952178-121553246
CIL_0003I0 CIL_0003I0_0002 CGP 7:121064067-121163097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007160 IMP cell-matrix adhesion
GO:0007605 IMP sensory perception of sound
GO:0016324 IDA apical plasma membrane
GO:0019226 IMP transmission of nerve impulse
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286149 OTOA-003 protein_coding Homo_sapiens 0 1932
ENST00000388956 OTOA-002 protein_coding Homo_sapiens 0 2621
ENST00000388957 OTOA-004 protein_coding Homo_sapiens 0 1936
ENST00000388958 OTOA-001 protein_coding Homo_sapiens 0 2865
ENST00000548889 RP11-368J21.3-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 981
ENST00000550753 RP11-368J21.3-001 processed_transcript Homo_sapiens 0 981
ENST00000563506 OTOA-006 retained_intron Homo_sapiens 0 981
ENST00000563871 OTOA-005 retained_intron Homo_sapiens 0 608

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