C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262519 SETD1A-001 ENSG00000099381 9606 + 16:30957294-30985116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262519 5.409±0.00 11.621±0.00 0.903±0.00 0.353±0.00 2.900±1.66 2.270±1.33 1.248±1.04 2.912±1.84 1.672±1.06 2.886±0.00 4.140±3.21 5.519±3.91 5.436±1.03 22.699±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000553 CIL_000553_0001 CGP 16:30949066-30985116
CIL_00044U CIL_00044U_0002 CGP 16:30957294-30989152

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019827 IEA stem cell maintenance
GO:0035097 IDA histone methyltransferase complex
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0048188 IDA Set1C/COMPASS complex
GO:0051568 IDA histone H3-K4 methylation
GO:2000179 IEA positive regulation of neural precursor cell proliferation
GO:2000648 IEA positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047075 Setd1a-001 protein_coding Mus_musculus 0 4244
ENSMUST00000047157 Setd1a-201 protein_coding Mus_musculus 0 4233
ENSMUST00000154987 Hsd3b7-003 processed_transcript Mus_musculus 0 3284
ENSMUST00000144406 Setd1a-002 protein_coding Mus_musculus 0 992
ENSMUST00000126761 Setd1a-004 protein_coding Mus_musculus 0 828
ENSDART00000083821 setd1a-201 protein_coding Danio_rerio 0 501
ENSDART00000131774 setd1a-001 protein_coding Danio_rerio 0 501
ENSDART00000125022 setd1a-202 protein_coding Danio_rerio 0 462
ENSMUST00000141439 Setd1a-005 processed_transcript Mus_musculus 0 398
ENSDART00000086165 setd1ba-001 protein_coding Danio_rerio 0 320
ENSMUST00000143951 Setd1a-003 protein_coding Mus_musculus 0 318
ENSMUST00000136823 Hsd3b7-006 processed_transcript Mus_musculus 3e-26 126

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