C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008QC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm67 VISTA 9606 17:12429509-13031929
GeneTranscriptPositionBiotype
ENSG00000006740 (ARHGAP44)
Rho GTPase activating protein 44 		ENST00000262444 (ARHGAP44-009) 12789760-12990584 protein_coding
ENST00000340825 (ARHGAP44-001) 12789539-12991643 protein_coding
ENST00000379672 (ARHGAP44-011) 12789539-12991642 protein_coding
ENST00000538915 (ARHGAP44-007) 12949681-12959045 retained_intron
ENST00000544416 (ARHGAP44-010) 12789760-12990584 nonsense_mediated_decay
ENST00000578087 (ARHGAP44-005) 12973712-12981047 processed_transcript
ENST00000578442 (ARHGAP44-003) 12790491-12929381 retained_intron
ENST00000580768 (ARHGAP44-002) 12789540-12991642 nonsense_mediated_decay
ENST00000581437 (ARHGAP44-006) 12980108-12985033 protein_coding
ENST00000583608 (ARHGAP44-012) 12955764-12974310 protein_coding
ENST00000584974 (ARHGAP44-013) 12984489-12988916 retained_intron
ENST00000616670 (ARHGAP44-201) 12944120-12959043 protein_coding
ENSG00000006744 (ELAC2)
elaC ribonuclease Z 2 		ENST00000338034 (ELAC2-001) 12992391-13018187 protein_coding
ENST00000395962 (ELAC2-002) 12992392-13018021 protein_coding
ENST00000426905 (ELAC2-012) 12992560-13017999 protein_coding
ENST00000446899 (ELAC2-007) 12998412-13011670 protein_coding
ENST00000465825 (ELAC2-006) 12992393-13000897 retained_intron
ENST00000476042 (ELAC2-009) 13000177-13003554 nonsense_mediated_decay
ENST00000480891 (ELAC2-004) 12992391-13006546 retained_intron
ENST00000484122 (ELAC2-003) 12992391-13017628 retained_intron
ENST00000487229 (ELAC2-014) 12992393-13004108 retained_intron
ENST00000491478 (ELAC2-011) 12994430-12998508 retained_intron
ENST00000492559 (ELAC2-010) 12995703-13002384 retained_intron
ENST00000578071 (ELAC2-015) 13011724-13017966 protein_coding
ENST00000578104 (ELAC2-018) 13000225-13003786 retained_intron
ENST00000578991 (ELAC2-019) 12998449-13002725 retained_intron
ENST00000580504 (ELAC2-020) 13005772-13017664 protein_coding
ENST00000581499 (ELAC2-017) 13011663-13017643 protein_coding
ENST00000583371 (ELAC2-016) 13011693-13018065 protein_coding
ENST00000584650 (ELAC2-013) 12992611-13013239 protein_coding
ENST00000609101 (ELAC2-021) 13003549-13017683 protein_coding
ENST00000609345 (ELAC2-023) 13003506-13017615 processed_transcript
ENST00000609757 (ELAC2-022) 13011687-13017590 protein_coding
ENSG00000179136 (LINC00670)
long intergenic non-protein coding RNA 670 		ENST00000313495 (LINC00670-001) 12549782-12637187 lincRNA
ENST00000577679 (LINC00670-002) 12549981-12635782 lincRNA
ENST00000577863 (LINC00670-003) 12635166-12642854 lincRNA
ENSG00000227274 (AC005358.3)
 ENST00000445508 (AC005358.3-001) 12671862-12706135 antisense
ENSG00000263707 (RP11-597M12.1)
 ENST00000582915 (RP11-597M12.1-001) 12990149-12990610 antisense
ENSG00000265489 (RP11-1090M7.1)
 ENST00000584772 (RP11-1090M7.1-001) 12760140-12790242 antisense
ENSG00000277621 (RP11-597M12.2)
 ENST00000617898 (RP11-597M12.2-001) 12982613-12983002 antisense
ENSG00000280168 (RP11-1090M7.3)
 ENST00000623460 (RP11-1090M7.3-001) 12973033-12973834 TEC
CIL_0008QC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm67 VISTA 10090 11:64908855-65510457
GeneTranscriptPositionBiotype
ENSMUSG00000020542 (Myocd)
myocardin 		ENSMUST00000101042 (Myocd-002) 65178428-65218559 protein_coding
ENSMUST00000102635 (Myocd-001) 65176561-65269941 protein_coding
ENSMUST00000108695 (Myocd-201) 65176574-65269989 protein_coding
ENSMUST00000144399 (Myocd-005) 65196102-65205467 protein_coding
ENSMUST00000150823 (Myocd-004) 65223734-65269854 processed_transcript
ENSMUST00000151483 (Myocd-003) 65176773-65182157 processed_transcript
ENSMUSG00000020548 (1700086D15Rik)
RIKEN cDNA 1700086D15 gene 		ENSMUST00000020855 (1700086D15Rik-201) 65151910-65159890 protein_coding
ENSMUST00000108696 (1700086D15Rik-001) 65151910-65159891 protein_coding
ENSMUSG00000020549 (Elac2)
elaC homolog 2 (E. coli) 		ENSMUST00000071891 (Elac2-001) 64979038-65002069 protein_coding
ENSMUST00000101049 (Elac2-003) 64979074-65001600 protein_coding
ENSMUST00000108697 (Elac2-005) 64979071-65001328 protein_coding
ENSMUST00000128693 (Elac2-006) 65000336-65001888 processed_transcript
ENSMUST00000132308 (Elac2-004) 64985473-64992506 protein_coding
ENSMUST00000140369 (Elac2-002) 64979091-65002067 processed_transcript
ENSMUST00000142574 (Elac2-007) 64979072-64980659 processed_transcript
ENSMUSG00000033389 (Arhgap44)
Rho GTPase activating protein 44 		ENSMUST00000047463 (Arhgap44-004) 65002039-65162961 protein_coding
ENSMUST00000093001 (Arhgap44-002) 65051475-65162567 protein_coding
ENSMUST00000093002 (Arhgap44-001) 65002040-65162904 protein_coding
ENSMUST00000130420 (Arhgap44-003) 65002041-65059834 protein_coding
ENSMUSG00000082857 (Gm12293)
predicted gene 12293 		ENSMUST00000121898 (Gm12293-001) 65169844-65170433 processed_pseudogene
ENSMUSG00000083935 (Gm12294)
predicted gene 12294 		ENSMUST00000119723 (Gm12294-001) 65037052-65037541 processed_pseudogene
ENSMUSG00000085162 (Gm12295)
predicted gene 12295 		ENSMUST00000128453 (Gm12295-001) 65277654-65287833 lincRNA
ENSMUST00000130362 (Gm12295-002) 65285936-65365798 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QC_0001ENSG00000006740ENST00000262444ENST00000340825ENST00000379672ENST00000544416ENST00000580768ENST00000584974ENSG00000006744ENST00000338034ENST00000395962ENST00000426905ENST00000480891ENST00000487229ENST00000583371ENST00000584650ENST00000609101ENST00000609345ENSG00000179136ENST00000313495ENST00000577679ENST00000577863ENSG00000227274ENST00000445508ENSG00000263707ENST00000582915ENSG00000265489ENST00000584772ENSG00000277621ENST00000617898ENSG00000280168ENST00000623460CIL_0008QC_0002ENSMUSG00000020542ENSMUST00000101042ENSMUST00000102635ENSMUST00000108695ENSMUST00000144399ENSMUST00000150823ENSMUST00000151483ENSMUSG00000020548ENSMUST00000020855ENSMUST00000108696ENSMUSG00000020549ENSMUST00000071891ENSMUST00000101049ENSMUST00000108697ENSMUST00000140369ENSMUSG00000033389ENSMUST00000047463ENSMUST00000093002ENSMUST00000130420ENSMUSG00000082857ENSMUST00000121898ENSMUSG00000083935ENSMUST00000119723ENSMUSG00000085162ENSMUST00000128453ENSMUST00000130362
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006740 ENST00000262444 N/A N/A N/A 1.704±0.00 N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A N/A N/A
ENST00000340825 N/A 0.666±0.00 N/A 5.866±3.75 1.189±0.00 1.651±0.20 2.742±0.00 N/A 0.093±0.00 4.389±0.00 N/A 1.164±0.00 3.411±0.56 2.592±0.00
ENST00000379672 N/A N/A N/A 3.732±2.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544416 N/A N/A N/A 3.436±0.00 N/A 4.100±0.00 N/A N/A N/A N/A 0.528±0.00 N/A 1.595±0.00 0.669±0.00
ENST00000578087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580768 N/A N/A N/A N/A N/A N/A N/A N/A 0.274±0.00 1.500±0.00 0.551±0.00 0.213±0.00 2.340±0.00 0.495±0.00
ENST00000581437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584974 N/A N/A 0.191±0.00 N/A 0.244±0.01 0.569±0.00 N/A N/A 0.144±0.10 N/A N/A 0.410±0.30 N/A N/A
ENST00000616670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000006744 ENST00000338034 N/A 4.837±0.00 1.764±0.00 1.427±0.00 N/A 2.694±0.04 3.856±0.98 N/A 2.145±1.58 2.152±1.29 8.521±0.00 8.805±7.20 9.944±2.34 4.141±0.38
ENST00000395962 9.087±0.00 8.173±0.00 0.535±0.00 4.601±0.00 5.896±2.56 4.589±0.00 14.153±0.00 14.284±0.00 5.222±3.89 1.766±0.00 5.473±5.05 9.535±0.00 9.236±0.57 10.441±0.00
ENST00000426905 2.322±0.00 5.346±0.00 N/A 4.310±0.00 4.005±0.00 N/A N/A 6.302±0.00 N/A N/A 3.338±0.00 3.621±0.00 2.781±0.00 N/A
ENST00000446899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480891 N/A N/A N/A N/A N/A 1.076±0.00 0.950±0.00 N/A 0.889±0.00 N/A N/A N/A N/A N/A
ENST00000484122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487229 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A N/A N/A N/A
ENST00000491478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583371 N/A N/A N/A N/A N/A N/A N/A 5.682±0.00 4.587±0.00 N/A N/A N/A N/A N/A
ENST00000584650 3.122±0.00 N/A N/A 3.661±0.00 5.500±0.00 3.608±0.00 N/A 1.485±0.00 2.566±0.00 2.674±0.00 4.586±0.00 N/A N/A 5.589±0.00
ENST00000609101 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.712±0.00 N/A N/A N/A N/A
ENST00000609345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.370±0.00 N/A N/A N/A
ENST00000609757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179136 ENST00000313495 0.259±0.00 N/A N/A 0.061±0.00 0.017±0.00 0.163±0.00 N/A N/A N/A 0.576±0.00 N/A 0.063±0.06 0.053±0.02 0.220±0.11
ENST00000577679 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A 0.388±0.13 N/A 0.058±0.00 0.220±0.05 N/A
ENST00000577863 N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227274 ENST00000445508 0.035±0.00 N/A 0.092±0.00 N/A N/A 0.520±0.00 0.117±0.02 N/A 0.156±0.00 0.042±0.00 N/A 0.148±0.13 N/A 0.038±0.02
ENSG00000263707 ENST00000582915 1.968±0.00 6.588±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.370±0.00 N/A N/A N/A
ENSG00000265489 ENST00000584772 N/A N/A 0.117±0.00 0.173±0.00 N/A N/A N/A N/A 0.012±0.00 0.131±0.00 0.155±0.00 0.365±0.20 N/A 0.322±0.00
ENSG00000277621 ENST00000617898 N/A 0.330±0.00 N/A 0.077±0.00 N/A 0.169±0.00 N/A 0.323±0.00 N/A 0.063±0.00 N/A 0.258±0.02 N/A 0.566±0.43
ENSG00000280168 ENST00000623460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020542 ENSMUST00000101042 0.143±0.00 0.120±0.04 N/A 0.028±0.00 0.152±0.10 2.358±0.42 5.216±1.45 0.171±0.06 0.026±0.01 0.538±0.23 0.018±0.01 3.709±0.68 N/A 0.083±0.03
ENSMUST00000102635 N/A 0.040±0.00 N/A 0.006±0.00 0.224±0.10 N/A N/A N/A 0.020±0.01 0.119±0.00 0.070±0.03 0.952±0.00 0.042±0.03 0.018±0.00
ENSMUST00000108695 0.140±0.00 0.069±0.02 N/A 0.014±0.00 0.039±0.00 0.722±0.30 4.498±0.00 0.082±0.03 0.025±0.02 0.438±0.24 0.044±0.00 1.776±0.74 0.170±0.02 0.135±0.06
ENSMUST00000144399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A
ENSMUST00000150823 N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A
ENSMUST00000151483 N/A 0.078±0.01 N/A 0.008±0.00 N/A N/A N/A 0.035±0.00 0.012±0.01 N/A 0.031±0.01 N/A N/A N/A
ENSMUSG00000020548 ENSMUST00000020855 0.059±0.03 0.035±0.00 0.014±0.00 0.088±0.02 N/A 0.071±0.00 0.015±0.00 0.032±0.01 0.010±0.01 0.183±0.03 0.012±0.00 0.069±0.03 0.019±0.00 1.140±1.08
ENSMUST00000108696 0.059±0.03 0.035±0.00 0.014±0.00 0.088±0.02 N/A 0.072±0.00 0.015±0.00 0.032±0.01 0.010±0.01 0.184±0.03 0.012±0.00 0.070±0.03 0.019±0.00 1.339±1.28
ENSMUSG00000020549 ENSMUST00000071891 2.527±0.19 6.942±1.89 2.099±0.40 4.475±0.58 3.213±0.93 3.753±0.46 N/A 2.654±0.58 3.457±0.95 N/A 1.686±0.11 5.105±1.43 3.420±1.62 N/A
ENSMUST00000101049 8.023±0.57 13.969±2.37 5.570±0.01 9.234±1.23 6.563±1.78 4.950±1.88 4.939±0.62 5.505±0.52 5.237±1.72 5.432±0.45 6.283±0.69 10.962±1.89 6.608±1.59 5.707±1.47
ENSMUST00000108697 N/A N/A N/A 8.026±0.00 N/A N/A N/A N/A N/A N/A N/A 10.727±0.00 10.013±4.11 6.454±0.00
ENSMUST00000128693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140369 1.853±0.15 4.942±0.84 2.108±0.31 3.246±0.22 2.416±0.48 1.319±0.00 2.064±0.00 1.476±0.31 1.493±0.33 N/A 1.389±0.17 3.646±0.13 2.337±0.88 N/A
ENSMUST00000142574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033389 ENSMUST00000047463 2.027±0.19 3.001±0.17 3.809±0.51 5.135±1.85 1.250±0.00 1.043±0.10 3.121±1.56 1.167±0.16 0.608±0.00 7.527±2.28 1.827±0.32 2.475±0.73 4.050±2.97 3.965±0.45
ENSMUST00000093001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000093002 N/A N/A N/A 14.300±0.00 N/A N/A N/A 1.016±0.00 N/A N/A N/A N/A 4.503±2.28 2.489±0.45
ENSMUST00000130420 N/A 1.908±0.00 N/A N/A 0.881±0.00 N/A 1.476±0.00 1.193±0.06 N/A 5.797±0.00 1.633±0.00 2.649±0.31 N/A N/A
ENSMUSG00000082857 ENSMUST00000121898 0.096±0.01 N/A 0.109±0.04 N/A N/A N/A 0.151±0.00 0.106±0.00 N/A 0.304±0.19 N/A 0.183±0.03 0.025±0.00 1.345±1.55
ENSMUSG00000083935 ENSMUST00000119723 N/A N/A 0.142±0.00 0.190±0.12 N/A 0.488±0.00 N/A 0.150±0.00 N/A N/A N/A 0.218±0.11 0.068±0.03 N/A
ENSMUSG00000085162 ENSMUST00000128453 0.065±0.05 0.050±0.00 0.633±0.09 0.006±0.00 0.022±0.01 0.102±0.06 0.424±0.25 0.026±0.01 0.006±0.00 0.103±0.02 0.037±0.02 0.260±0.20 0.030±0.03 0.016±0.01
ENSMUST00000130362 N/A N/A N/A 0.017±0.00 N/A N/A 0.636±0.00 N/A N/A 0.112±0.02 0.337±0.10 N/A 0.093±0.00 N/A

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