C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cerebral endothelial cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047521 Cercam-001 ENSMUSG00000039787 10090 + 2:29869494-29882840 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047521 14.607±1.07 9.121±1.50 21.716±0.81 9.350±1.32 10.888±2.17 7.891±1.40 1.994±0.32 1.000±0.22 7.605±8.96 4.016±0.45 1.299±0.33 18.008±7.87 6.367±6.83 2.047±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ST CIL_0000ST_0003 CGP 2:29820075-29882840
CIL_0007E9 CIL_0007E9_0002 CGP 2:29869164-29931746

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0007155 IEA cell adhesion
GO:0009103 IEA lipopolysaccharide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372838 CERCAM-002 protein_coding Homo_sapiens 0 1589
ENST00000372842 CERCAM-005 protein_coding Homo_sapiens 0 1415
ENST00000411852 CERCAM-011 protein_coding Homo_sapiens 3.99931e-42 176
ENST00000420512 CERCAM-001 protein_coding Homo_sapiens 0 669
ENST00000463535 CERCAM-006 retained_intron Homo_sapiens 0 970
ENST00000472858 CERCAM-014 processed_transcript Homo_sapiens 0 193
ENST00000493788 CERCAM-003 processed_transcript Homo_sapiens 3.00018e-42 176
ENST00000612334 CERCAM-201 protein_coding Homo_sapiens 0 1358
ENST00000613052 CERCAM-202 protein_coding Homo_sapiens 0 780

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