C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase A2, group VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047816 Pla2g6-003 ENSMUSG00000042632 10090 - 15:79286228-79328228 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000047816
Transcript ID Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000047816 1.041±0.00 0.762±0.00 1.936±0.00 2.120±0.26 1.854±0.00 3.442±0.00 2.687±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0007CL CIL_0007CL_0002 CGP 15:79258195-79328390
CIL_0003QB CIL_0003QB_0002 CGP 15:79286228-79359072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005516 IEA calmodulin binding
GO:0006935 IEA chemotaxis
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332509 PLA2G6-001 protein_coding Homo_sapiens 0 1360
ENST00000335539 PLA2G6-201 protein_coding Homo_sapiens 0 2632
ENST00000402064 PLA2G6-002 protein_coding Homo_sapiens 0 2610
ENST00000435484 PLA2G6-003 protein_coding Homo_sapiens 0 307
ENST00000448094 PLA2G6-023 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000454670 PLA2G6-026 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000463287 PLA2G6-025 retained_intron Homo_sapiens 0 318
ENST00000491986 PLA2G6-022 retained_intron Homo_sapiens 0 403
ENST00000496409 PLA2G6-024 retained_intron Homo_sapiens 0 318

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