C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047835 Scaf11-201 ENSMUSG00000033228 10090 - 15:96411698-96460843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047835 3.471±3.08 18.821±3.38 7.421±2.06 4.892±2.06 8.667±5.44 8.361±2.49 1.584±0.70 7.126±2.02 6.837±3.45 7.577±1.66 2.719±0.86 17.104±6.41 12.242±4.88 0.584±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0002 CGP 15:96287518-96460843
CIL_0005YN CIL_0005YN_0002 CGP 15:96411698-96642913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000375 IEA RNA splicing, via transesterification reactions
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369367 SCAF11-001 protein_coding Homo_sapiens 0 1482
ENST00000465950 SCAF11-004 protein_coding Homo_sapiens 0 1482
ENST00000547018 SCAF11-008 non_stop_decay Homo_sapiens 0 763
ENST00000547654 SCAF11-011 processed_transcript Homo_sapiens 0 272
ENST00000549162 SCAF11-009 protein_coding Homo_sapiens 0 1482
ENST00000550629 SCAF11-010 processed_transcript Homo_sapiens 0 268
ENST00000550893 SCAF11-012 protein_coding Homo_sapiens 0 268

Loading