C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen beta(1-O)galactosyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047903 Colgalt1-201 ENSMUSG00000034807 10090 + 8:71611024-71624909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047903 47.733±20.57 41.278±25.45 45.303±6.41 35.038±10.65 48.346±20.20 36.089±8.20 15.655±3.79 17.291±6.98 23.696±4.84 56.427±14.08 11.562±0.91 80.550±33.60 58.425±17.84 7.929±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076B CIL_00076B_0002 CGP 8:71597648-71624909
CIL_00076A CIL_00076A_0002 CGP 8:71611024-71671757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005788 ISS endoplasmic reticulum lumen
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IEA membrane
GO:0050211 IEA procollagen galactosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252599 COLGALT1-001 protein_coding Homo_sapiens 0 2043
ENST00000597075 COLGALT1-008 retained_intron Homo_sapiens 0 689
ENST00000597147 COLGALT1-007 protein_coding Homo_sapiens 0 656
ENST00000600474 COLGALT1-005 protein_coding Homo_sapiens 0 453
ENST00000601354 COLGALT1-006 processed_transcript Homo_sapiens 0 424

Loading