C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047993 Hoxa13-201 ENSMUSG00000038203 10090 - 6:52258853-52260880 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLiverLungMuscleOvaryENSMUST00000047993
Transcript ID Adipose Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000047993 0.099±0.02 9.946±1.50 0.024±0.00 0.030±0.00 0.028±0.00 1.234±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P8 CIL_0003P8_0002 CGP 6:52242106-52260880
CIL_0003P5 CIL_0003P5_0002 CGP 6:52257694-52318378

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IMP vasculogenesis
GO:0001886 IMP endothelial cell morphogenesis
GO:0001894 IMP tissue homeostasis
GO:0003281 IMP ventricular septum development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0009653 IMP anatomical structure morphogenesis
GO:0009887 IMP organ morphogenesis
GO:0030510 IMP regulation of BMP signaling pathway
GO:0030539 IMP male genitalia development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0045840 IMP positive regulation of mitosis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048839 IMP inner ear development
GO:0048844 IMP artery morphogenesis
GO:0060442 IMP branching involved in prostate gland morphogenesis
GO:0060847 IMP endothelial cell fate specification
GO:2001055 IMP positive regulation of mesenchymal cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222753 HOXA13-001 protein_coding Homo_sapiens 0 1646

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