C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222753 HOXA13-001 ENSG00000106031 9606 - 7:27195018-27200106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverMuscleOvaryPlacentaTestisENST00000222753
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000222753 0.314±0.00 0.020±0.00 0.090±0.02 3.315±1.21 0.025±0.00 5.112±0.00 0.153±0.14 0.216±0.11 3.491±1.81 0.090±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P8 CIL_0003P8_0001 CGP 7:27181510-27200106
CIL_0003P5 CIL_0003P5_0001 CGP 7:27193503-27247176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001570 IEA vasculogenesis
GO:0001886 IEA endothelial cell morphogenesis
GO:0001894 IEA tissue homeostasis
GO:0003281 IEA ventricular septum development
GO:0003677 TAS:IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 IEA anatomical structure morphogenesis
GO:0009887 IEA organ morphogenesis
GO:0030510 IEA regulation of BMP signaling pathway
GO:0030539 IEA male genitalia development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045840 IEA positive regulation of mitosis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048839 IEA inner ear development
GO:0048844 IEA artery morphogenesis
GO:0060442 IEA branching involved in prostate gland morphogenesis
GO:0060847 IEA endothelial cell fate specification
GO:2001055 IEA positive regulation of mesenchymal cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147595 Hoxa13-001 protein_coding Mus_musculus 0 2100
ENSMUST00000047993 Hoxa13-201 protein_coding Mus_musculus 0 1646
ENSMUST00000114416 Hoxa13-202 protein_coding Mus_musculus 0 944
ENSMUST00000174763 Hoxa13-004 processed_transcript Mus_musculus 0 944
ENSMUST00000172961 Hoxa13-003 processed_transcript Mus_musculus 0 935
ENSMUST00000173368 Hoxa13-002 processed_transcript Mus_musculus 0 928

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