C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003P5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106031-ENSG00000106038 CGP 9606 7:27193503-27247176
GeneTranscriptPositionBiotype
ENSG00000106031 (HOXA13)
homeobox A13 		ENST00000222753 (HOXA13-001) 27195018-27200106 protein_coding
ENST00000518136 (HOXA13-002) 27193503-27195600 processed_transcript
ENSG00000106038 (EVX1)
even-skipped homeobox 1 		ENST00000222761 (EVX1-003) 27242700-27246425 protein_coding
ENST00000496902 (EVX1-001) 27242700-27246573 protein_coding
ENST00000580535 (EVX1-004) 27243368-27247176 protein_coding
ENSG00000243766 (HOTTIP)
HOXA distal transcript antisense RNA 		ENST00000421733 (HOTTIP-002) 27198575-27201236 antisense
ENST00000472494 (HOTTIP-005) 27200437-27202822 antisense
ENST00000521028 (HOTTIP-001) 27201842-27207259 antisense
ENST00000605136 (HOTTIP-003) 27200437-27201823 antisense
ENST00000614457 (HOTTIP-006) 27200421-27201687 antisense
ENSG00000253308 (RP1-170O19.17)
 ENST00000523608 (RP1-170O19.17-001) 27239243-27241228 lincRNA
ENSG00000253405 (EVX1-AS)
EVX1 antisense RNA 		ENST00000517726 (EVX1-AS-001) 27241429-27247229 antisense
ENST00000519050 (EVX1-AS-003) 27241930-27242962 antisense
ENST00000519218 (EVX1-AS-002) 27241950-27243959 antisense
ENSG00000278708 (HOTTIP_2)
HOXA transcript at the distal tip, conserved region 2 		ENST00000616633 (HOTTIP_2.1-201) 27201844-27202219 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003P5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038203-ENSMUSG00000005503 CGP 10090 6:52257694-52318378
GeneTranscriptPositionBiotype
ENSMUSG00000005503 (Evx1)
even skipped homeotic gene 1 homolog 		ENSMUST00000031787 (Evx1-001) 52313498-52318378 protein_coding
ENSMUST00000129243 (Evx1-002) 52313552-52316644 protein_coding
ENSMUSG00000038203 (Hoxa13)
homeobox A13 		ENSMUST00000047993 (Hoxa13-201) 52258853-52260880 protein_coding
ENSMUST00000114416 (Hoxa13-202) 52258871-52260802 protein_coding
ENSMUST00000147595 (Hoxa13-001) 52257694-52260803 protein_coding
ENSMUST00000172961 (Hoxa13-003) 52258871-52260802 processed_transcript
ENSMUST00000173368 (Hoxa13-002) 52258871-52260802 processed_transcript
ENSMUST00000174763 (Hoxa13-004) 52258871-52260802 processed_transcript
ENSMUSG00000055408 (Hottip)
Hoxa distal transcript antisense RNA 		ENSMUST00000141300 (Hottip-001) 52262784-52267079 lincRNA
ENSMUST00000152875 (Hottip-002) 52262775-52267603 lincRNA
ENSMUSG00000086126 (5730457N03Rik)
RIKEN cDNA 5730457N03 gene 		ENSMUST00000125305 (5730457N03Rik-001) 52308389-52314832 antisense
ENSMUST00000137258 (5730457N03Rik-002) 52310836-52313505 antisense
ENSMUSG00000099173 (Gm27985)
predicted gene, 27985 		ENSMUST00000185112 (Gm27985-201) 52262592-52262969 misc_RNA
ENSMUSG00000099229 (Gm27383)
predicted gene, 27383 		ENSMUST00000184418 (Gm27383-201) 52263058-52263418 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P5_0001ENSG00000106031ENST00000222753ENST00000518136ENSG00000106038ENST00000222761ENST00000496902ENST00000580535ENSG00000243766ENST00000421733ENST00000472494ENST00000521028ENST00000605136ENST00000614457ENSG00000253308ENST00000523608ENSG00000253405ENST00000517726ENST00000519050ENST00000519218ENSG00000278708ENST00000616633CIL_0003P5_0002ENSMUSG00000005503ENSMUST00000031787ENSMUST00000129243ENSMUSG00000038203ENSMUST00000047993ENSMUST00000114416ENSMUST00000147595ENSMUST00000172961ENSMUST00000173368ENSMUST00000174763ENSMUSG00000055408ENSMUST00000141300ENSMUST00000152875ENSMUSG00000086126ENSMUST00000125305ENSMUST00000137258ENSMUSG00000099173ENSMUST00000185112ENSMUSG00000099229ENSMUST00000184418
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P5_0001ENSG00000106031ENST00000222753ENSG00000106038ENST00000222761ENST00000496902ENST00000580535ENSG00000243766ENST00000421733ENST00000472494ENST00000521028ENST00000614457ENSG00000253308ENST00000523608ENSG00000253405ENST00000517726ENST00000519050ENST00000519218ENSG00000278708ENST00000616633CIL_0003P5_0002ENSMUSG00000005503ENSMUST00000031787ENSMUST00000129243ENSMUSG00000038203ENSMUST00000047993ENSMUST00000114416ENSMUST00000147595ENSMUST00000172961ENSMUST00000173368ENSMUST00000174763ENSMUSG00000055408ENSMUST00000141300ENSMUST00000152875ENSMUSG00000086126ENSMUST00000125305ENSMUST00000137258ENSMUSG00000099173ENSMUST00000185112ENSMUSG00000099229ENSMUST00000184418
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106031 ENST00000222753 0.314±0.00 0.020±0.00 N/A N/A 0.090±0.02 3.315±1.21 N/A 0.025±0.00 5.112±0.00 N/A 0.153±0.14 0.216±0.11 3.491±1.81 0.090±0.06
ENST00000518136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000106038 ENST00000222761 N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A 0.112±0.03 N/A N/A
ENST00000496902 N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A
ENST00000580535 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A 0.138±0.10 0.084±0.02 0.778±0.00
ENSG00000243766 ENST00000421733 N/A N/A N/A N/A 0.529±0.00 N/A 0.050±0.00 N/A N/A N/A N/A 0.408±0.00 N/A N/A
ENST00000472494 N/A N/A N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A
ENST00000521028 N/A N/A N/A N/A 0.010±0.00 N/A N/A 0.005±0.00 N/A N/A 0.014±0.00 0.036±0.01 0.374±0.15 0.005±0.00
ENST00000605136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A 0.016±0.00
ENSG00000253308 ENST00000523608 N/A N/A N/A N/A N/A N/A N/A 0.234±0.00 N/A N/A N/A 0.198±0.00 0.088±0.00 0.359±0.11
ENSG00000253405 ENST00000517726 N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A 0.150±0.04 N/A N/A
ENST00000519050 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A N/A 0.119±0.00 N/A 0.408±0.00
ENST00000519218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.09 0.109±0.00 0.922±0.00
ENSG00000278708 ENST00000616633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.415±0.00 0.180±0.10 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005503 ENSMUST00000031787 N/A N/A 0.297±0.02 0.686±0.31 N/A 1.052±0.34 N/A 0.013±0.00 0.009±0.00 0.033±0.00 N/A 0.954±0.34 0.098±0.05 0.045±0.01
ENSMUST00000129243 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.054±0.00 N/A
ENSMUSG00000038203 ENSMUST00000047993 0.099±0.02 N/A N/A N/A N/A 9.946±1.50 N/A 0.024±0.00 0.030±0.00 0.028±0.00 1.234±0.00 0.045±0.00 N/A N/A
ENSMUST00000114416 0.179±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.085±0.00 N/A 0.050±0.00 7.425±2.54 0.147±0.00
ENSMUST00000147595 0.186±0.04 N/A 11.705±3.28 0.035±0.00 N/A 2.347±0.68 N/A 0.015±0.00 0.017±0.00 N/A 1.040±0.24 0.009±0.00 0.803±0.87 0.015±0.00
ENSMUST00000172961 0.316±0.05 N/A N/A N/A N/A N/A N/A 0.011±0.00 0.022±0.00 0.084±0.00 N/A N/A N/A 0.064±0.00
ENSMUST00000173368 0.207±0.01 N/A N/A N/A N/A 11.776±3.32 N/A 0.011±0.00 0.065±0.00 0.057±0.00 N/A N/A N/A N/A
ENSMUST00000174763 0.179±0.00 N/A N/A N/A N/A 9.159±2.53 N/A 0.010±0.00 N/A 0.085±0.00 N/A 0.050±0.00 7.425±2.54 0.147±0.00
ENSMUSG00000055408 ENSMUST00000141300 0.057±0.00 N/A 0.717±0.19 N/A N/A 3.528±1.16 N/A N/A N/A N/A 0.036±0.01 N/A 0.116±0.13 N/A
ENSMUST00000152875 0.025±0.01 N/A 0.990±0.00 0.007±0.00 N/A 1.894±0.00 N/A 0.027±0.01 0.026±0.00 0.050±0.00 0.029±0.01 N/A 0.023±0.02 0.017±0.00
ENSMUSG00000086126 ENSMUST00000125305 0.011±0.00 N/A 0.214±0.03 0.247±0.25 N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.059±0.05 0.046±0.02
ENSMUST00000137258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.248±0.00
ENSMUSG00000099173 ENSMUST00000185112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.06 N/A N/A N/A
ENSMUSG00000099229 ENSMUST00000184418 N/A N/A N/A N/A N/A 5.927±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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