C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048026 Hoxa11-001 ENSMUSG00000038210 10090 - 6:52242106-52245810 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000048026
Transcript ID Placenta
ENSMUST00000048026 0.710±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810
CIL_0003P8 CIL_0003P8_0002 CGP 6:52242106-52260880

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001656 IGI metanephros development
GO:0001658 IGI branching involved in ureteric bud morphogenesis
GO:0001759 IGI organ induction
GO:0003677 TAS DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0007501 IDA mesodermal cell fate specification
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0010720 IGI positive regulation of cell development
GO:0030326 IGI embryonic limb morphogenesis
GO:0032330 IGI regulation of chondrocyte differentiation
GO:0032332 IGI positive regulation of chondrocyte differentiation
GO:0032993 IDA protein-DNA complex
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0042733 IGI embryonic digit morphogenesis
GO:0043234 IDA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048589 IGI developmental growth
GO:0060065 IGI uterus development
GO:0060272 IGI embryonic skeletal joint morphogenesis
GO:0060351 IGI cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082354 hoxd9a-001 protein_coding Danio_rerio 0.00004 55
ENST00000006015 HOXA11-001 protein_coding Homo_sapiens 0 1877
ENST00000517402 HOXA11-002 protein_coding Homo_sapiens 0 1469

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