C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VIIA and Rab interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048121 Myrip-001 ENSMUSG00000041794 10090 + 9:120303936-120474841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048121 1.573±0.52 0.990±0.14 1.281±0.34 3.287±2.20 0.748±0.22 2.582±0.40 0.625±0.17 0.290±0.17 0.032±0.02 3.840±1.70 0.243±0.05 1.671±0.79 0.158±0.08 0.093±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00013U CIL_00013U_0002 CGP 9:120149742-120474841
CIL_0003YR CIL_0003YR_0002 CGP 9:120303936-120495327

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000145 IDA exocyst
GO:0001750 IDA photoreceptor outer segment
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0006886 IEA intracellular protein transport
GO:0015629 IDA actin cytoskeleton
GO:0017022 ISO myosin binding
GO:0017137 ISO Rab GTPase binding
GO:0030050 TAS vesicle transport along actin filament
GO:0031045 ISS dense core granule
GO:0032024 ISS positive regulation of insulin secretion
GO:0042470 IDA melanosome
GO:0045202 IDA synapse
GO:0046872 IEA metal ion binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051018 IPI protein kinase A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302541 MYRIP-001 protein_coding Homo_sapiens 0 2366
ENST00000396217 MYRIP-201 protein_coding Homo_sapiens 0 1779
ENST00000425621 MYRIP-004 protein_coding Homo_sapiens 0 1445
ENST00000444716 MYRIP-002 protein_coding Homo_sapiens 0 2117
ENST00000458292 MYRIP-006 nonsense_mediated_decay Homo_sapiens 0 1439
ENST00000458441 MYRIP-005 nonsense_mediated_decay Homo_sapiens 0 1779
ENST00000459828 MYRIP-007 processed_transcript Homo_sapiens 0 1953
ENST00000475082 MYRIP-003 processed_transcript Homo_sapiens 0 621
ENST00000482033 MYRIP-008 processed_transcript Homo_sapiens 0 436
ENST00000539167 MYRIP-202 protein_coding Homo_sapiens 0 1953

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