C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IKAROS family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048122 Ikzf1-004 ENSMUSG00000018654 10090 + 11:11686229-11761424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverENSMUST00000048122
Transcript ID Adrenal Colon Liver
ENSMUST00000048122 2.839±0.84 1.936±0.00 0.247±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0002 VISTA 11:11227967-11828770
CIL_0008P3 CIL_0008P3_0002 VISTA 11:11375621-11977027
CIL_0008XT CIL_0008XT_0002 VISTA 11:11399170-12000205
CIL_0007SD CIL_0007SD_0002 VISTA 11:11453227-12053958
CIL_0007MQ CIL_0007MQ_0003 UCNEbase 11:11528251-11753919
CIL_00089U CIL_00089U_0002 VISTA 11:11536402-12137998
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_000642 CIL_000642_0002 CGP 11:11685003-11808962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001779 IMP natural killer cell differentiation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0005721 IDA pericentric heterochromatin
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0030097 IMP hemopoiesis
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0030900 IMP forebrain development
GO:0040018 IGI positive regulation of multicellular organism growth
GO:0043565 IMP sequence-specific DNA binding
GO:0045660 IMP positive regulation of neutrophil differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048535 IMP lymph node development
GO:0048538 IMP thymus development
GO:0048541 IMP Peyer's patch development
GO:0048732 IMP gland development
GO:0051138 IMP positive regulation of NK T cell differentiation
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331340 IKZF1-001 protein_coding Homo_sapiens 0 588
ENST00000343574 IKZF1-201 protein_coding Homo_sapiens 0 846
ENST00000346667 IKZF1-202 protein_coding Homo_sapiens 7e-36 158
ENST00000349824 IKZF1-203 protein_coding Homo_sapiens 0 263
ENST00000357364 IKZF1-204 protein_coding Homo_sapiens 0 263
ENST00000359197 IKZF1-002 protein_coding Homo_sapiens 0 263
ENST00000413698 IKZF1-007 protein_coding Homo_sapiens 0 263
ENST00000438033 IKZF1-003 protein_coding Homo_sapiens 0 769
ENST00000439701 IKZF1-004 protein_coding Homo_sapiens 1.96182e-44 185
ENST00000440768 IKZF1-205 protein_coding Homo_sapiens 1.99965e-42 180
ENST00000462201 IKZF1-011 retained_intron Homo_sapiens 7.00649e-45 185
ENST00000471793 IKZF1-005 retained_intron Homo_sapiens 0 588
ENST00000484847 IKZF1-008 processed_transcript Homo_sapiens 1.4013e-45 187
ENST00000492782 IKZF1-009 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000612658 IKZF1-206 protein_coding Homo_sapiens 0 263
ENST00000615491 IKZF1-207 protein_coding Homo_sapiens 0 366

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