| Source ID |
Type |
Tax ID |
Position |
| IKZF1 |
UCNEbase |
9606 |
7:50342933-50382449  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007MQ_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000185811' => 'IKAROS family zinc finger 1 (Ikaros)',
'ENSG00000231681' => null,
'ENSG00000235620' => null,
'ENSMUSG00000018654' => 'IKAROS family zinc finger 1',
'ENSMUSG00000062511' => 'RIKEN cDNA 4930512M02 gene',
'ENSMUSG00000073145' => 'predicted gene 12000',
'ENSMUSG00000085652' => 'predicted gene 11999',
'ENSMUSG00000087452' => 'predicted gene 11998',
'ENSDARG00000013539' => 'IKAROS family zinc finger 1 (Ikaros)'
),
'gene_name_arr' => array(
'ENSG00000185811' => 'IKZF1',
'ENSG00000231681' => 'AC020743.3',
'ENSG00000235620' => 'AC020743.4',
'ENSMUSG00000018654' => 'Ikzf1',
'ENSMUSG00000062511' => '4930512M02Rik',
'ENSMUSG00000073145' => 'Gm12000',
'ENSMUSG00000085652' => 'Gm11999',
'ENSMUSG00000087452' => 'Gm11998',
'ENSDARG00000013539' => 'ikzf1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 23 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 82 => 'Liver',
(int) 98 => 'Lung',
(int) 110 => 'Muscle',
(int) 118 => 'Ovary',
(int) 129 => 'Placenta',
(int) 139 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 36,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000331340' => array(
'start' => '50304782',
'end' => '50405101',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-001'
),
'ENST00000343574' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-201'
),
'ENST00000346667' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-202'
),
'ENST00000349824' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-203'
),
'ENST00000357364' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-204'
),
'ENST00000359197' => array(
'start' => '50304782',
'end' => '50402525',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-002'
),
'ENST00000413698' => array(
'start' => '50304728',
'end' => '50369444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-007'
),
'ENST00000426121' => array(
'start' => '50327649',
'end' => '50400009',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-006'
),
'ENST00000438033' => array(
'start' => '50308721',
'end' => '50400876',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-003'
),
'ENST00000439701' => array(
'start' => '50308722',
'end' => '50402566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-004'
),
'ENST00000440768' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-205'
),
'ENST00000462201' => array(
'start' => '50308754',
'end' => '50377327',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-011'
),
'ENST00000471793' => array(
'start' => '50327379',
'end' => '50400627',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-005'
),
'ENST00000484847' => array(
'start' => '50304124',
'end' => '50327985',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-008'
),
'ENST00000492119' => array(
'start' => '50367665',
'end' => '50369704',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-010'
),
'ENST00000492782' => array(
'start' => '50308748',
'end' => '50369839',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-009'
),
'ENST00000612658' => array(
'start' => '50304782',
'end' => '50400627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-206'
),
'ENST00000615491' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-207'
),
'ENST00000457592' => array(
'start' => '50202239',
'end' => '50204318',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.3-001'
),
'ENST00000440351' => array(
'start' => '50274790',
'end' => '50275622',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.4-001'
),
'ENSMUST00000018798' => array(
'start' => '11686445',
'end' => '11769798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-003'
),
'ENSMUST00000048122' => array(
'start' => '11686229',
'end' => '11761424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-004'
),
'ENSMUST00000065433' => array(
'start' => '11685925',
'end' => '11772112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-002'
),
'ENSMUST00000076700' => array(
'start' => '11686213',
'end' => '11772926',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-201'
),
'ENSMUST00000126058' => array(
'start' => '11685003',
'end' => '11754083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-001'
),
'ENSMUST00000141436' => array(
'start' => '11685003',
'end' => '11707800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-005'
),
'ENSMUST00000081896' => array(
'start' => '11589223',
'end' => '11627824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930512M02Rik-001'
),
'ENSMUST00000149910' => array(
'start' => '11623711',
'end' => '11627835',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930512M02Rik-002'
),
'ENSMUST00000132007' => array(
'start' => '11695133',
'end' => '11696439',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12000-001'
),
'ENSMUST00000145789' => array(
'start' => '11642203',
'end' => '11685400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm11999-001'
),
'ENSMUST00000146304' => array(
'start' => '11557421',
'end' => '11579460',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm11998-001'
),
'ENSDART00000016430' => array(
'start' => '15911857',
'end' => '15948447',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-001'
),
'ENSDART00000042377' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-002'
),
'ENSDART00000046079' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-003'
),
'ENSDART00000050481' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-004'
),
'ENSDART00000079724' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-005'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
'ENSG00000185811' => array(
[maximum depth reached]
),
'ENSG00000231681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Testis',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Bladder',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Testis'
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018654' => array(
[maximum depth reached]
),
'ENSMUSG00000062511' => array(
[maximum depth reached]
),
'ENSMUSG00000073145' => array(
[maximum depth reached]
),
'ENSMUSG00000085652' => array(
[maximum depth reached]
),
'ENSMUSG00000087452' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Colon',
(int) 15 => 'Liver',
(int) 16 => 'Adipose',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Breast',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis'
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
'ENSDARG00000013539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000185811' => 'IKAROS family zinc finger 1 (Ikaros)',
'ENSG00000231681' => null,
'ENSG00000235620' => null,
'ENSMUSG00000018654' => 'IKAROS family zinc finger 1',
'ENSMUSG00000062511' => 'RIKEN cDNA 4930512M02 gene',
'ENSMUSG00000073145' => 'predicted gene 12000',
'ENSMUSG00000085652' => 'predicted gene 11999',
'ENSMUSG00000087452' => 'predicted gene 11998',
'ENSDARG00000013539' => 'IKAROS family zinc finger 1 (Ikaros)'
)
$gene_name_arr = array(
'ENSG00000185811' => 'IKZF1',
'ENSG00000231681' => 'AC020743.3',
'ENSG00000235620' => 'AC020743.4',
'ENSMUSG00000018654' => 'Ikzf1',
'ENSMUSG00000062511' => '4930512M02Rik',
'ENSMUSG00000073145' => 'Gm12000',
'ENSMUSG00000085652' => 'Gm11999',
'ENSMUSG00000087452' => 'Gm11998',
'ENSDARG00000013539' => 'ikzf1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50180166',
'seq_end' => '50331035',
'region_length' => '150869',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50342933',
'seq_end' => '50382449',
'region_length' => '39516',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0003',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '11528251',
'seq_end' => '11753919',
'region_length' => '225668',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0004',
'tax_id' => '7955',
'chromosome' => '13',
'seq_start' => '15921505',
'seq_end' => '15959095',
'region_length' => '37590',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 23 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 82 => 'Liver',
(int) 98 => 'Lung',
(int) 110 => 'Muscle',
(int) 118 => 'Ovary',
(int) 129 => 'Placenta',
(int) 139 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 36
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000331340' => array(
'start' => '50304782',
'end' => '50405101',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-001'
),
'ENST00000343574' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-201'
),
'ENST00000346667' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-202'
),
'ENST00000349824' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-203'
),
'ENST00000357364' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-204'
),
'ENST00000359197' => array(
'start' => '50304782',
'end' => '50402525',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-002'
),
'ENST00000413698' => array(
'start' => '50304728',
'end' => '50369444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-007'
),
'ENST00000426121' => array(
'start' => '50327649',
'end' => '50400009',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-006'
),
'ENST00000438033' => array(
'start' => '50308721',
'end' => '50400876',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-003'
),
'ENST00000439701' => array(
'start' => '50308722',
'end' => '50402566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-004'
),
'ENST00000440768' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-205'
),
'ENST00000462201' => array(
'start' => '50308754',
'end' => '50377327',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-011'
),
'ENST00000471793' => array(
'start' => '50327379',
'end' => '50400627',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-005'
),
'ENST00000484847' => array(
'start' => '50304124',
'end' => '50327985',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-008'
),
'ENST00000492119' => array(
'start' => '50367665',
'end' => '50369704',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-010'
),
'ENST00000492782' => array(
'start' => '50308748',
'end' => '50369839',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-009'
),
'ENST00000612658' => array(
'start' => '50304782',
'end' => '50400627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-206'
),
'ENST00000615491' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-207'
),
'ENST00000457592' => array(
'start' => '50202239',
'end' => '50204318',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.3-001'
),
'ENST00000440351' => array(
'start' => '50274790',
'end' => '50275622',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.4-001'
),
'ENSMUST00000018798' => array(
'start' => '11686445',
'end' => '11769798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-003'
),
'ENSMUST00000048122' => array(
'start' => '11686229',
'end' => '11761424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-004'
),
'ENSMUST00000065433' => array(
'start' => '11685925',
'end' => '11772112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-002'
),
'ENSMUST00000076700' => array(
'start' => '11686213',
'end' => '11772926',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-201'
),
'ENSMUST00000126058' => array(
'start' => '11685003',
'end' => '11754083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-001'
),
'ENSMUST00000141436' => array(
'start' => '11685003',
'end' => '11707800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-005'
),
'ENSMUST00000081896' => array(
'start' => '11589223',
'end' => '11627824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930512M02Rik-001'
),
'ENSMUST00000149910' => array(
'start' => '11623711',
'end' => '11627835',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930512M02Rik-002'
),
'ENSMUST00000132007' => array(
'start' => '11695133',
'end' => '11696439',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12000-001'
),
'ENSMUST00000145789' => array(
'start' => '11642203',
'end' => '11685400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm11999-001'
),
'ENSMUST00000146304' => array(
'start' => '11557421',
'end' => '11579460',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm11998-001'
),
'ENSDART00000016430' => array(
'start' => '15911857',
'end' => '15948447',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-001'
),
'ENSDART00000042377' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-002'
),
'ENSDART00000046079' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-003'
),
'ENSDART00000050481' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-004'
),
'ENSDART00000079724' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-005'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
'ENSG00000185811' => array(
[maximum depth reached]
),
'ENSG00000231681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Testis',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Bladder',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Testis'
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018654' => array(
[maximum depth reached]
),
'ENSMUSG00000062511' => array(
[maximum depth reached]
),
'ENSMUSG00000073145' => array(
[maximum depth reached]
),
'ENSMUSG00000085652' => array(
[maximum depth reached]
),
'ENSMUSG00000087452' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Colon',
(int) 15 => 'Liver',
(int) 16 => 'Adipose',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Breast',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis'
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
'ENSDARG00000013539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50342933',
'seq_end' => '50382449',
'region_length' => '39516',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
)
$gene_el = array(
'ENST00000457592' => array(
'Testis' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000231681'
$is_first = false
$tran_el = array(
'Testis' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000457592'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000185811' => 'IKAROS family zinc finger 1 (Ikaros)',
'ENSG00000231681' => null,
'ENSG00000235620' => null,
'ENSMUSG00000018654' => 'IKAROS family zinc finger 1',
'ENSMUSG00000062511' => 'RIKEN cDNA 4930512M02 gene',
'ENSMUSG00000073145' => 'predicted gene 12000',
'ENSMUSG00000085652' => 'predicted gene 11999',
'ENSMUSG00000087452' => 'predicted gene 11998',
'ENSDARG00000013539' => 'IKAROS family zinc finger 1 (Ikaros)'
),
'gene_name_arr' => array(
'ENSG00000185811' => 'IKZF1',
'ENSG00000231681' => 'AC020743.3',
'ENSG00000235620' => 'AC020743.4',
'ENSMUSG00000018654' => 'Ikzf1',
'ENSMUSG00000062511' => '4930512M02Rik',
'ENSMUSG00000073145' => 'Gm12000',
'ENSMUSG00000085652' => 'Gm11999',
'ENSMUSG00000087452' => 'Gm11998',
'ENSDARG00000013539' => 'ikzf1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 23 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 82 => 'Liver',
(int) 98 => 'Lung',
(int) 110 => 'Muscle',
(int) 118 => 'Ovary',
(int) 129 => 'Placenta',
(int) 139 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 36,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000331340' => array(
'start' => '50304782',
'end' => '50405101',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-001'
),
'ENST00000343574' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-201'
),
'ENST00000346667' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-202'
),
'ENST00000349824' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-203'
),
'ENST00000357364' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-204'
),
'ENST00000359197' => array(
'start' => '50304782',
'end' => '50402525',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-002'
),
'ENST00000413698' => array(
'start' => '50304728',
'end' => '50369444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-007'
),
'ENST00000426121' => array(
'start' => '50327649',
'end' => '50400009',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-006'
),
'ENST00000438033' => array(
'start' => '50308721',
'end' => '50400876',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-003'
),
'ENST00000439701' => array(
'start' => '50308722',
'end' => '50402566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-004'
),
'ENST00000440768' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-205'
),
'ENST00000462201' => array(
'start' => '50308754',
'end' => '50377327',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-011'
),
'ENST00000471793' => array(
'start' => '50327379',
'end' => '50400627',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-005'
),
'ENST00000484847' => array(
'start' => '50304124',
'end' => '50327985',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-008'
),
'ENST00000492119' => array(
'start' => '50367665',
'end' => '50369704',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-010'
),
'ENST00000492782' => array(
'start' => '50308748',
'end' => '50369839',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-009'
),
'ENST00000612658' => array(
'start' => '50304782',
'end' => '50400627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-206'
),
'ENST00000615491' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-207'
),
'ENST00000457592' => array(
'start' => '50202239',
'end' => '50204318',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.3-001'
),
'ENST00000440351' => array(
'start' => '50274790',
'end' => '50275622',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.4-001'
),
'ENSMUST00000018798' => array(
'start' => '11686445',
'end' => '11769798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-003'
),
'ENSMUST00000048122' => array(
'start' => '11686229',
'end' => '11761424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-004'
),
'ENSMUST00000065433' => array(
'start' => '11685925',
'end' => '11772112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-002'
),
'ENSMUST00000076700' => array(
'start' => '11686213',
'end' => '11772926',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-201'
),
'ENSMUST00000126058' => array(
'start' => '11685003',
'end' => '11754083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-001'
),
'ENSMUST00000141436' => array(
'start' => '11685003',
'end' => '11707800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-005'
),
'ENSMUST00000081896' => array(
'start' => '11589223',
'end' => '11627824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930512M02Rik-001'
),
'ENSMUST00000149910' => array(
'start' => '11623711',
'end' => '11627835',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930512M02Rik-002'
),
'ENSMUST00000132007' => array(
'start' => '11695133',
'end' => '11696439',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12000-001'
),
'ENSMUST00000145789' => array(
'start' => '11642203',
'end' => '11685400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm11999-001'
),
'ENSMUST00000146304' => array(
'start' => '11557421',
'end' => '11579460',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm11998-001'
),
'ENSDART00000016430' => array(
'start' => '15911857',
'end' => '15948447',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-001'
),
'ENSDART00000042377' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-002'
),
'ENSDART00000046079' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-003'
),
'ENSDART00000050481' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-004'
),
'ENSDART00000079724' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-005'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
'ENSG00000185811' => array(
[maximum depth reached]
),
'ENSG00000231681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Testis',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Bladder',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Testis'
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018654' => array(
[maximum depth reached]
),
'ENSMUSG00000062511' => array(
[maximum depth reached]
),
'ENSMUSG00000073145' => array(
[maximum depth reached]
),
'ENSMUSG00000085652' => array(
[maximum depth reached]
),
'ENSMUSG00000087452' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Colon',
(int) 15 => 'Liver',
(int) 16 => 'Adipose',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Breast',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis'
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
'ENSDARG00000013539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000185811' => 'IKAROS family zinc finger 1 (Ikaros)',
'ENSG00000231681' => null,
'ENSG00000235620' => null,
'ENSMUSG00000018654' => 'IKAROS family zinc finger 1',
'ENSMUSG00000062511' => 'RIKEN cDNA 4930512M02 gene',
'ENSMUSG00000073145' => 'predicted gene 12000',
'ENSMUSG00000085652' => 'predicted gene 11999',
'ENSMUSG00000087452' => 'predicted gene 11998',
'ENSDARG00000013539' => 'IKAROS family zinc finger 1 (Ikaros)'
)
$gene_name_arr = array(
'ENSG00000185811' => 'IKZF1',
'ENSG00000231681' => 'AC020743.3',
'ENSG00000235620' => 'AC020743.4',
'ENSMUSG00000018654' => 'Ikzf1',
'ENSMUSG00000062511' => '4930512M02Rik',
'ENSMUSG00000073145' => 'Gm12000',
'ENSMUSG00000085652' => 'Gm11999',
'ENSMUSG00000087452' => 'Gm11998',
'ENSDARG00000013539' => 'ikzf1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0001',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50180166',
'seq_end' => '50331035',
'region_length' => '150869',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50342933',
'seq_end' => '50382449',
'region_length' => '39516',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0003',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '11528251',
'seq_end' => '11753919',
'region_length' => '225668',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0004',
'tax_id' => '7955',
'chromosome' => '13',
'seq_start' => '15921505',
'seq_end' => '15959095',
'region_length' => '37590',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 8 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 23 => 'Brain',
(int) 36 => 'Breast',
(int) 46 => 'Colon',
(int) 56 => 'Heart',
(int) 69 => 'Kidney',
(int) 82 => 'Liver',
(int) 98 => 'Lung',
(int) 110 => 'Muscle',
(int) 118 => 'Ovary',
(int) 129 => 'Placenta',
(int) 139 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 36
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000331340' => array(
'start' => '50304782',
'end' => '50405101',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-001'
),
'ENST00000343574' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-201'
),
'ENST00000346667' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-202'
),
'ENST00000349824' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-203'
),
'ENST00000357364' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-204'
),
'ENST00000359197' => array(
'start' => '50304782',
'end' => '50402525',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-002'
),
'ENST00000413698' => array(
'start' => '50304728',
'end' => '50369444',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-007'
),
'ENST00000426121' => array(
'start' => '50327649',
'end' => '50400009',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-006'
),
'ENST00000438033' => array(
'start' => '50308721',
'end' => '50400876',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-003'
),
'ENST00000439701' => array(
'start' => '50308722',
'end' => '50402566',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-004'
),
'ENST00000440768' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-205'
),
'ENST00000462201' => array(
'start' => '50308754',
'end' => '50377327',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-011'
),
'ENST00000471793' => array(
'start' => '50327379',
'end' => '50400627',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IKZF1-005'
),
'ENST00000484847' => array(
'start' => '50304124',
'end' => '50327985',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-008'
),
'ENST00000492119' => array(
'start' => '50367665',
'end' => '50369704',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-010'
),
'ENST00000492782' => array(
'start' => '50308748',
'end' => '50369839',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'IKZF1-009'
),
'ENST00000612658' => array(
'start' => '50304782',
'end' => '50400627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-206'
),
'ENST00000615491' => array(
'start' => '50304782',
'end' => '50405098',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IKZF1-207'
),
'ENST00000457592' => array(
'start' => '50202239',
'end' => '50204318',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.3-001'
),
'ENST00000440351' => array(
'start' => '50274790',
'end' => '50275622',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AC020743.4-001'
),
'ENSMUST00000018798' => array(
'start' => '11686445',
'end' => '11769798',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-003'
),
'ENSMUST00000048122' => array(
'start' => '11686229',
'end' => '11761424',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-004'
),
'ENSMUST00000065433' => array(
'start' => '11685925',
'end' => '11772112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-002'
),
'ENSMUST00000076700' => array(
'start' => '11686213',
'end' => '11772926',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-201'
),
'ENSMUST00000126058' => array(
'start' => '11685003',
'end' => '11754083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-001'
),
'ENSMUST00000141436' => array(
'start' => '11685003',
'end' => '11707800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ikzf1-005'
),
'ENSMUST00000081896' => array(
'start' => '11589223',
'end' => '11627824',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '4930512M02Rik-001'
),
'ENSMUST00000149910' => array(
'start' => '11623711',
'end' => '11627835',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '4930512M02Rik-002'
),
'ENSMUST00000132007' => array(
'start' => '11695133',
'end' => '11696439',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm12000-001'
),
'ENSMUST00000145789' => array(
'start' => '11642203',
'end' => '11685400',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Gm11999-001'
),
'ENSMUST00000146304' => array(
'start' => '11557421',
'end' => '11579460',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm11998-001'
),
'ENSDART00000016430' => array(
'start' => '15911857',
'end' => '15948447',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-001'
),
'ENSDART00000042377' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-002'
),
'ENSDART00000046079' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-003'
),
'ENSDART00000050481' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-004'
),
'ENSDART00000079724' => array(
'start' => '15912157',
'end' => '15948394',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ikzf1-005'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MQ_0001' => array(
'genes_in_region' => array(
'ENSG00000185811' => array(
[maximum depth reached]
),
'ENSG00000231681' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Colon',
(int) 2 => 'Heart',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Ovary',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 10 => 'Brain',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Testis',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Testis',
(int) 20 => 'Colon',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Heart',
(int) 34 => 'Lung',
(int) 35 => 'Bladder',
(int) 36 => 'Brain',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Bladder',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Testis'
)
),
'CIL_0007MQ_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000018654' => array(
[maximum depth reached]
),
'ENSMUSG00000062511' => array(
[maximum depth reached]
),
'ENSMUSG00000073145' => array(
[maximum depth reached]
),
'ENSMUSG00000085652' => array(
[maximum depth reached]
),
'ENSMUSG00000087452' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adrenal',
(int) 14 => 'Colon',
(int) 15 => 'Liver',
(int) 16 => 'Adipose',
(int) 17 => 'Bladder',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Bladder',
(int) 32 => 'Brain',
(int) 33 => 'Breast',
(int) 34 => 'Colon',
(int) 35 => 'Heart',
(int) 36 => 'Kidney',
(int) 37 => 'Liver',
(int) 38 => 'Lung',
(int) 39 => 'Muscle',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Adipose',
(int) 44 => 'Bladder',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Breast',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Brain',
(int) 80 => 'Breast',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis'
)
),
'CIL_0007MQ_0004' => array(
'genes_in_region' => array(
'ENSDARG00000013539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Muscle',
(int) 9 => 'Heart',
(int) 10 => 'Liver',
(int) 11 => 'Brain',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MQ_0002',
'tax_id' => '9606',
'chromosome' => '7',
'seq_start' => '50342933',
'seq_end' => '50382449',
'region_length' => '39516',
'region_type' => 'UCNEbase',
'el_id' => 'IKZF1'
)
)
$gene_el = array(
'ENST00000457592' => array(
'Testis' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000231681'
$is_first = false
$tran_el = array(
'Testis' => array(
'average_FPKM' => '0.016',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000457592'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(IKZF1)