C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IKAROS family zinc finger 1 (Ikaros)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331340 IKZF1-001 ENSG00000185811 9606 + 7:50304782-50405101 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000331340
Transcript ID Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000331340 0.195±0.00 0.359±0.00 0.084±0.03 0.086±0.00 0.284±0.13 0.174±0.05 0.273±0.09 0.290±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0001 VISTA 7:49879868-50480692
CIL_0008P3 CIL_0008P3_0001 VISTA 7:49993452-50594868
CIL_0008XT CIL_0008XT_0001 VISTA 7:50018042-50619048
CIL_0007SD CIL_0007SD_0001 VISTA 7:50081734-50682493
CIL_0007MQ CIL_0007MQ_0001 UCNEbase 7:50180166-50331035
CIL_00089U CIL_00089U_0001 VISTA 7:50196544-50798008
CIL_000642 CIL_000642_0001 CGP 7:50304124-50542535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001779 IEA natural killer cell differentiation
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005721 IEA pericentric heterochromatin
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007498 TAS mesoderm development
GO:0016568 IEA chromatin modification
GO:0030097 IEA hemopoiesis
GO:0030183 IEA B cell differentiation
GO:0030217 IEA T cell differentiation
GO:0030900 IEA forebrain development
GO:0040018 IEA positive regulation of multicellular organism growth
GO:0043565 IEA sequence-specific DNA binding
GO:0045660 IEA positive regulation of neutrophil differentiation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048535 IEA lymph node development
GO:0048538 IEA thymus development
GO:0048541 IEA Peyer's patch development
GO:0048732 IEA gland development
GO:0051138 IEA positive regulation of NK T cell differentiation
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076700 Ikzf1-201 protein_coding Mus_musculus 0 2012
ENSMUST00000065433 Ikzf1-002 protein_coding Mus_musculus 0 1751
ENSMUST00000018798 Ikzf1-003 protein_coding Mus_musculus 0 1299
ENSMUST00000048122 Ikzf1-004 protein_coding Mus_musculus 0 588
ENSMUST00000126058 Ikzf1-001 protein_coding Mus_musculus 4.06377e-44 185
ENSMUST00000119614 Ikzf4-004 protein_coding Mus_musculus 1e-34 154
ENSMUST00000105233 Ikzf4-003 nonsense_mediated_decay Mus_musculus 1e-34 154
ENSMUST00000133342 Ikzf4-001 protein_coding Mus_musculus 1e-34 154
ENSDART00000053878 IKZF4-201 protein_coding Danio_rerio 4e-29 135
ENSDART00000145028 IKZF4-001 protein_coding Danio_rerio 4e-29 135
ENSMUST00000065334 Ikzf4-002 protein_coding Mus_musculus 1e-28 134
ENSDART00000100311 IKZF2-001 protein_coding Danio_rerio 4e-24 119
ENSMUST00000141436 Ikzf1-005 protein_coding Mus_musculus 2e-17 97

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