C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claspin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048391 Clspn-001 ENSMUSG00000042489 10090 + 4:126556935-126593903 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048391 0.028±0.00 0.065±0.05 0.234±0.00 1.412±1.02 0.132±0.04 0.235±0.09 0.080±0.03 0.059±0.01 4.585±5.71 0.095±0.05 0.022±0.02 0.739±0.54 3.076±2.49 1.168±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JU CIL_0002JU_0002 CGP 4:126489541-126593903

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IEA DNA damage checkpoint
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0010997 IEA anaphase-promoting complex binding
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0031572 ISS G2 DNA damage checkpoint
GO:0032147 IEA activation of protein kinase activity
GO:0033314 IEA mitotic DNA replication checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251195 CLSPN-001 protein_coding Homo_sapiens 0 1975
ENST00000318121 CLSPN-005 protein_coding Homo_sapiens 0 2012
ENST00000373220 CLSPN-003 protein_coding Homo_sapiens 0 2012
ENST00000517467 CLSPN-006 retained_intron Homo_sapiens 0 512
ENST00000520551 CLSPN-004 protein_coding Homo_sapiens 0 1853

Loading