C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 171, member A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049057 Fam171a2-001 ENSMUSG00000034685 10090 - 11:102436981-102447682 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungOvaryTestisENSMUST00000049057
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Ovary Testis
ENSMUST00000049057 19.899±0.21 6.106±0.90 48.473±11.10 9.016±0.55 4.830±0.61 5.934±0.00 6.836±0.24 20.723±4.66 0.864±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005J8 CIL_0005J8_0002 CGP 11:102402985-102437048
CIL_0005J7 CIL_0005J7_0002 CGP 11:102430315-102447682
CIL_0004D6 CIL_0004D6_0003 CGP 11:102436981-102470122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293443 FAM171A2-001 protein_coding Homo_sapiens 0 3373
ENST00000588067 FAM171A2-002 nonsense_mediated_decay Homo_sapiens 0 695
ENST00000589407 FAM171A2-004 nonsense_mediated_decay Homo_sapiens 0 684
ENST00000592560 FAM171A2-003 retained_intron Homo_sapiens 0 684

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