C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain without mariner transposase fusion
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049246 Setmar-001 ENSMUSG00000034639 10090 + 6:108065045-108077122 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049246 2.110±0.37 0.990±0.18 3.345±0.85 2.406±0.39 1.350±0.34 1.143±0.15 1.003±0.14 2.141±0.26 1.123±0.40 1.740±0.25 2.010±0.30 2.328±0.75 1.719±0.51 0.409±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050L CIL_00050L_0002 CGP 6:107529726-108077122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000729 IEA DNA double-strand break processing
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0004519 IEA endonuclease activity
GO:0005634 IEA nucleus
GO:0006303 ISS double-strand break repair via nonhomologous end joining
GO:0008270 IEA zinc ion binding
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035861 ISS site of double-strand break
GO:0042803 IEA protein homodimerization activity
GO:0043566 IEA structure-specific DNA binding
GO:0071157 IEA negative regulation of cell cycle arrest
GO:2001034 IEA positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 IEA negative regulation of chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358065 SETMAR-001 protein_coding Homo_sapiens 0 706
ENST00000430981 SETMAR-002 protein_coding Homo_sapiens 0 706

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