C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049453 Ube3c-201 ENSMUSG00000039000 10090 + 5:29569242-29676077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049453 11.219±1.78 9.343±1.35 8.849±0.54 12.188±3.08 7.036±2.27 9.296±0.95 8.591±0.30 9.619±0.33 7.127±1.81 8.831±0.85 10.742±0.46 12.492±1.79 10.546±2.98 10.612±7.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PG CIL_0007PG_0002 UCNEbase 5:29276112-29620813
CIL_0005Z2 CIL_0005Z2_0002 CGP 5:29473034-29676077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125313 ube3c-201 protein_coding Danio_rerio 0 1016
ENSDART00000134547 ube3c-001 protein_coding Danio_rerio 0 1016
ENST00000348165 UBE3C-001 protein_coding Homo_sapiens 0 3829
ENST00000389103 UBE3C-002 protein_coding Homo_sapiens 0 1168
ENST00000469336 UBE3C-006 retained_intron Homo_sapiens 0 425
ENST00000470408 UBE3C-004 retained_intron Homo_sapiens 0 1616
ENST00000474153 UBE3C-009 retained_intron Homo_sapiens 0 261
ENST00000494532 UBE3C-008 retained_intron Homo_sapiens 0 662
ENST00000497368 UBE3C-007 retained_intron Homo_sapiens 0 473
ENST00000611269 UBE3C-201 protein_coding Homo_sapiens 0 1168

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