C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 125
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050004 Rnf125-201 ENSMUSG00000033107 10090 + 18:20944625-20983848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050004
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050004 4.374±0.12 0.233±0.09 3.910±0.05 3.028±0.73 2.521±0.00 1.235±0.15 6.123±6.44 5.319±0.00 0.571±0.19 1.379±0.89 0.731±0.39 5.501±2.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FN CIL_0002FN_0003 CGP 18:20817224-20983848
CIL_0003X2 CIL_0003X2_0002 CGP 18:20944625-21028223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002376 IEA immune system process
GO:0004842 EXP ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0005829 TAS cytosol
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217740 RNF125-001 protein_coding Homo_sapiens 0 579
ENST00000580209 RNF125-002 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000580863 RNF125-005 retained_intron Homo_sapiens 0 418
ENST00000583384 RNF125-003 processed_transcript Homo_sapiens 0 440

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