C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule associated monooxygenase, calponin and LIM domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050149 Mical2-001 ENSMUSG00000038244 10090 + 7:112225856-112355194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050149 10.125±4.59 2.592±0.52 9.503±0.13 0.353±0.12 6.275±0.55 17.468±1.17 5.344±1.43 2.751±0.29 2.419±1.21 29.242±1.54 2.000±0.53 12.790±3.41 11.163±5.25 3.098±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0002 VISTA 7:111980454-112581088
CIL_0008YS CIL_0008YS_0002 VISTA 7:111997825-112599422
CIL_0007SQ CIL_0007SQ_0002 VISTA 7:112051476-112653289
CIL_0004J2 CIL_0004J2_0002 CGP 7:112116019-112355194
CIL_0004J1 CIL_0004J1_0002 CGP 7:112225856-112413104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 ISS heart looping
GO:0003779 ISS actin binding
GO:0005634 ISS nucleus
GO:0007010 ISS cytoskeleton organization
GO:0007507 ISS heart development
GO:0008270 IEA zinc ion binding
GO:0010735 ISS positive regulation of transcription via serum response element binding
GO:0016709 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0019417 IDA sulfur oxidation
GO:0030042 ISS actin filament depolymerization
GO:0043914 ISS NADPH:sulfur oxidoreductase activity
GO:0055114 ISS oxidation-reduction process
GO:0071949 ISS FAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000139013 mical2b-001 protein_coding Danio_rerio 0 815
ENSDART00000141994 mical2b-002 protein_coding Danio_rerio 0 815
ENSDART00000109672 mical2b-201 protein_coding Danio_rerio 0 390
ENST00000256194 MICAL2-001 protein_coding Homo_sapiens 0 2540
ENST00000342902 MICAL2-201 protein_coding Homo_sapiens 0 2540
ENST00000379612 MICAL2-202 protein_coding Homo_sapiens 0 2540
ENST00000524685 MICAL2-023 protein_coding Homo_sapiens 0 427
ENST00000525119 MICAL2-024 protein_coding Homo_sapiens 0 473
ENST00000525618 MICAL2-004 retained_intron Homo_sapiens 0 350
ENST00000526475 MICAL2-014 processed_transcript Homo_sapiens 0 473
ENST00000526604 MICAL2-012 processed_transcript Homo_sapiens 0 322
ENST00000527195 MICAL2-019 processed_transcript Homo_sapiens 0 433
ENST00000527546 MICAL2-007 protein_coding Homo_sapiens 0 2540
ENST00000528931 MICAL2-006 retained_intron Homo_sapiens 0 3025
ENST00000529562 MICAL2-021 processed_transcript Homo_sapiens 0 351
ENST00000530021 MICAL2-005 retained_intron Homo_sapiens 0 351
ENST00000530691 MICAL2-003 retained_intron Homo_sapiens 0 2536
ENST00000531732 MICAL2-002 retained_intron Homo_sapiens 0 708
ENST00000533219 MICAL2-022 retained_intron Homo_sapiens 0 571
ENST00000534563 MICAL2-028 processed_transcript Homo_sapiens 0 399
ENST00000537344 MICAL2-203 protein_coding Homo_sapiens 0 2540

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