C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microtubule associated monooxygenase, calponin and LIM domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379612 MICAL2-202 ENSG00000133816 9606 + 11:12162079-12263789 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000379612
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000379612 1.347±0.00 5.047±0.00 1.433±0.00 4.016±0.38 3.098±0.00 4.282±0.00 9.436±0.00 2.605±1.63 2.450±0.07 8.732±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T3 CIL_0008T3_0001 VISTA 11:11882278-12483702
CIL_0008YS CIL_0008YS_0001 VISTA 11:11899653-12500760
CIL_0007SQ CIL_0007SQ_0001 VISTA 11:11959946-12561868
CIL_0004J2 CIL_0004J2_0001 CGP 11:11963106-12263789
CIL_0004J1 CIL_0004J1_0001 CGP 11:12094008-12359144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 ISS heart looping
GO:0003779 ISS actin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0007010 IDA cytoskeleton organization
GO:0007507 ISS heart development
GO:0008270 IEA zinc ion binding
GO:0010735 IMP positive regulation of transcription via serum response element binding
GO:0016709 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0019417 ISS sulfur oxidation
GO:0030042 ISS actin filament depolymerization
GO:0043914 IDA NADPH:sulfur oxidoreductase activity
GO:0055114 ISS oxidation-reduction process
GO:0071949 ISS FAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106648 Mical2-005 protein_coding Mus_musculus 0 2540
ENSMUST00000050149 Mical2-001 protein_coding Mus_musculus 0 2540
ENSMUST00000037991 Mical2-004 protein_coding Mus_musculus 0 2523
ENSMUST00000150428 Mical2-003 retained_intron Mus_musculus 0 1447
ENSMUST00000106647 Mical2-002 protein_coding Mus_musculus 0 1092
ENSMUST00000077159 Mical3-201 protein_coding Mus_musculus 0 627
ENSMUST00000144509 Mical2-006 protein_coding Mus_musculus 0 350

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