C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nyctalopin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050434 Nyx-001 ENSMUSG00000051228 10090 + X:13466110-13489313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050434 0.096±0.05 0.383±0.18 0.032±0.00 0.097±0.04 0.116±0.10 0.161±0.11 0.045±0.04 0.055±0.02 0.025±0.02 0.460±0.09 0.024±0.01 1.224±0.72 0.218±0.26 0.792±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LW CIL_0007LW_0002 UCNEbase X:13169486-13522078
CIL_0001X4 CIL_0001X4_0003 CGP X:13280970-13489313
CIL_0001X6 CIL_0001X6_0003 CGP X:13466110-13851367

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005622 IEA intracellular
GO:0007601 IMP visual perception
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342595 NYX-001 protein_coding Homo_sapiens 0 1487
ENST00000378220 NYX-002 protein_coding Homo_sapiens 0 1495

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