C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of Ty 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050630 Supt3-001 ENSMUSG00000038954 10090 + 17:44777152-45119290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050630
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050630 4.031±0.83 3.898±1.36 2.565±0.36 3.558±0.24 1.833±0.37 0.803±0.29 1.895±0.70 2.837±0.30 2.073±0.87 1.414±0.09 3.627±1.08 2.806±0.85 1.870±0.80 11.385±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LE CIL_0002LE_0002 CGP 17:44188572-44814797
CIL_00082L CIL_00082L_0002 VISTA 17:44317720-44919644
CIL_0007Z9 CIL_0007Z9_0002 VISTA 17:44422114-45023789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IEA transcription coactivator activity
GO:0004402 IEA histone acetyltransferase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016578 IEA histone deubiquitination
GO:0030914 IEA STAGA complex
GO:0033276 IEA transcription factor TFTC complex
GO:0043966 IEA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306867 SUPT3H-201 protein_coding Homo_sapiens 0 520
ENST00000371458 SUPT3H-004 protein_coding Homo_sapiens 0 287
ENST00000371459 SUPT3H-006 protein_coding Homo_sapiens 0 1009
ENST00000371460 SUPT3H-005 protein_coding Homo_sapiens 0 822
ENST00000475057 SUPT3H-001 nonsense_mediated_decay Homo_sapiens 0 1009

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