C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: suppressor of Ty 3 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475057 SUPT3H-001 ENSG00000196284 9606 - 6:44809317-45377953 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000475057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000475057 1.766±0.00 0.873±0.00 0.410±0.00 4.624±3.40 1.742±0.24 3.794±0.00 0.214±0.02 2.325±0.00 0.660±0.43 1.050±0.07 0.860±0.00 2.129±2.37 1.349±0.18 5.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DS CIL_0008DS_0001 VISTA 6:44250447-44853640
CIL_00028U CIL_00028U_0002 CGP 6:44387525-45377953
CIL_00028T CIL_00028T_0002 CGP 6:44809317-45664349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0004402 IDA histone acetyltransferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0016578 IDA histone deubiquitination
GO:0030914 IDA STAGA complex
GO:0033276 IDA transcription factor TFTC complex
GO:0043966 IDA histone H3 acetylation
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050630 Supt3-001 protein_coding Mus_musculus 0 1009
ENSMUST00000127798 Supt3-002 protein_coding Mus_musculus 0 961
ENSMUST00000129416 Supt3-003 protein_coding Mus_musculus 0 904

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