C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22 (organic cation transporter), member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050772 Slc22a17-201 ENSMUSG00000022199 10090 - 14:54906727-54913132 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050772 11.514±6.35 30.648±2.76 39.956±13.85 123.354±68.73 8.618±3.69 2.545±0.54 1.109±0.90 8.647±1.71 0.954±0.76 6.499±3.17 0.452±0.11 25.678±14.10 5.640±1.24 1.905±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_00051C CIL_00051C_0002 CGP 14:54892500-54913132
CIL_00051E CIL_00051E_0002 CGP 14:54906727-54926788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 IMP transmembrane signaling receptor activity
GO:0005515 IPI protein binding
GO:0005773 IEA vacuole
GO:0005887 ISS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0007165 IMP signal transduction
GO:0015891 IMP siderophore transport
GO:0022857 IEA transmembrane transporter activity
GO:0031301 ISS integral component of organelle membrane
GO:0055072 IEA iron ion homeostasis
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206544 SLC22A17-003 protein_coding Homo_sapiens 0 1162
ENST00000354772 SLC22A17-001 protein_coding Homo_sapiens 0 1860
ENST00000397260 SLC22A17-005 protein_coding Homo_sapiens 0 2593
ENST00000397267 SLC22A17-201 protein_coding Homo_sapiens 0 1162
ENST00000473917 SLC22A17-004 retained_intron Homo_sapiens 0 968
ENST00000474057 SLC22A17-002 processed_transcript Homo_sapiens 0 1007
ENST00000474774 SLC22A17-006 processed_transcript Homo_sapiens 0 298
ENST00000557699 SLC22A17-008 retained_intron Homo_sapiens 0 593

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