C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adhesion molecule with Ig-like domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369864 AMIGO1-001 ENSG00000181754 9606 - 1:109504175-109509682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369864 1.788±0.00 1.645±0.00 0.320±0.00 5.273±0.50 2.336±1.80 2.149±1.56 2.597±0.00 1.291±0.85 0.933±0.30 0.702±0.00 4.230±2.84 1.383±1.51 0.838±0.07 3.344±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007409 IEA axonogenesis
GO:0007413 ISS axonal fasciculation
GO:0016021 IEA integral component of membrane
GO:0042552 ISS myelination
GO:0042995 IEA cell projection
GO:0050772 ISS positive regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050909 Amigo1-201 protein_coding Mus_musculus 0 2455
ENSMUST00000106656 Amigo1-001 protein_coding Mus_musculus 0 2385
ENSMUST00000106661 Amigo1-002 protein_coding Mus_musculus 0 2104
ENSMUST00000106659 Amigo1-003 protein_coding Mus_musculus 0 1088
ENSMUST00000155782 Amigo1-004 processed_transcript Mus_musculus 0 739

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