C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adhesion molecule with Ig-like domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369862 AMIGO1-002 ENSG00000181754 9606 - 1:109507068-109509738 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartMuscleOvaryPlacentaENST00000369862
Transcript ID Bladder Heart Muscle Ovary Placenta
ENST00000369862 0.679±0.00 0.709±0.00 0.513±0.00 0.161±0.00 0.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098X CIL_00098X_0001 VISTA 1:108953074-109556228
CIL_00099A CIL_00099A_0001 VISTA 1:108974252-109576283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007413 ISS axonal fasciculation
GO:0042552 ISS myelination
GO:0042995 IEA cell projection
GO:0050772 ISS positive regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106656 Amigo1-001 protein_coding Mus_musculus 0 2183
ENSMUST00000050909 Amigo1-201 protein_coding Mus_musculus 0 1971
ENSMUST00000106661 Amigo1-002 protein_coding Mus_musculus 0 1971
ENSMUST00000106659 Amigo1-003 protein_coding Mus_musculus 0 1260
ENSMUST00000155782 Amigo1-004 processed_transcript Mus_musculus 0 739

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