C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239444 PCDHB8-001 ENSG00000120322 9606 + 5:141177790-141180529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartENST00000239444
Transcript ID Bladder Brain Heart
ENST00000239444 0.475±0.00 0.963±0.00 0.729±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0008 CGP 5:141172619-141180529
CIL_00062S CIL_00062S_0009 CGP 5:141177790-141186399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051442 Pcdhb16-201 protein_coding Mus_musculus 0 1772
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 1092
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 942
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 918
ENSMUST00000061717 Pcdhb6-201 protein_coding Mus_musculus 0 861
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 857
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 850
ENSMUST00000051126 Pcdhb10-201 protein_coding Mus_musculus 0 843
ENSMUST00000051163 Pcdhb8-201 protein_coding Mus_musculus 0 835
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 824
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 795
ENSMUST00000055495 Pcdhb12-201 protein_coding Mus_musculus 0 784
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 736

Loading