C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7964
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051522 Gm7964-202 ENSMUSG00000063902 10090 + 7:83755904-83757356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051522
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051522 2.828±0.32 1.541±0.58 2.158±1.30 4.416±1.00 1.613±0.48 2.045±1.23 1.864±0.39 2.794±0.65 4.195±1.89 1.774±0.21 0.292±0.11 1.768±0.64 0.875±0.79 2.928±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CN CIL_0009CN_0002 VISTA 7:83511918-84115428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0010988 IEA regulation of low-density lipoprotein particle clearance
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding
GO:0045716 IEA positive regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048260 IEA positive regulation of receptor-mediated endocytosis
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0072369 IEA regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351839 HNRNPK-012 protein_coding Homo_sapiens 0 2045
ENST00000360384 HNRNPK-002 protein_coding Homo_sapiens 0 2045
ENST00000376256 HNRNPK-006 retained_intron Homo_sapiens 0 494
ENST00000376263 HNRNPK-201 protein_coding Homo_sapiens 0 2012
ENST00000376281 HNRNPK-011 protein_coding Homo_sapiens 0 2012
ENST00000447355 HNRNPKP2-001 processed_pseudogene Homo_sapiens 0 1722
ENST00000457156 HNRNPK-005 protein_coding Homo_sapiens 0 1107
ENST00000472778 HNRNPK-008 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000481820 HNRNPK-010 protein_coding Homo_sapiens 0 438
ENST00000483135 HNRNPK-004 retained_intron Homo_sapiens 0 339
ENST00000485383 HNRNPKP4-001 processed_pseudogene Homo_sapiens 0 1842
ENST00000492865 HNRNPK-009 retained_intron Homo_sapiens 0 416
ENST00000493362 HNRNPK-007 retained_intron Homo_sapiens 0 268
ENST00000510896 HNRNPKP1-001 processed_pseudogene Homo_sapiens 0 1703
ENST00000511537 HNRNPKP3-003 processed_transcript Homo_sapiens 0 747
ENST00000534639 HNRNPKP3-001 transcribed_processed_pseudogene Homo_sapiens 0 741

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