C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351839 HNRNPK-012 ENSG00000165119 9606 - 9:83968197-83978452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000351839
Transcript ID Brain Ovary Testis
ENST00000351839 22.981±0.00 22.321±5.85 18.617±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0002 CGP 9:83938311-83980616
CIL_00007B CIL_00007B_0002 CGP 9:83968083-84004074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003697 TAS single-stranded DNA binding
GO:0003723 TAS:IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0007165 TAS signal transduction
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010988 IMP regulation of low-density lipoprotein particle clearance
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0042995 IEA cell projection
GO:0044822 IDA poly(A) RNA binding
GO:0045716 IMP positive regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048260 IMP positive regulation of receptor-mediated endocytosis
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0072369 IMP regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043269 Hnrnpk-002 protein_coding Mus_musculus 0 3496
ENSMUST00000177497 Hnrnpk-004 protein_coding Mus_musculus 0 3147
ENSMUST00000176207 Hnrnpk-008 protein_coding Mus_musculus 0 2730
ENSMUST00000116403 Hnrnpk-001 protein_coding Mus_musculus 0 2085
ENSMUST00000051522 Gm7964-202 protein_coding Mus_musculus 0 2045
ENSMUST00000177019 Hnrnpk-009 protein_coding Mus_musculus 0 1441
ENSMUST00000042280 Gm7964-201 protein_coding Mus_musculus 0 1375
ENSMUST00000176305 Hnrnpk-014 protein_coding Mus_musculus 0 1203
ENSMUST00000176257 Hnrnpk-020 retained_intron Mus_musculus 0 1160
ENSMUST00000176609 Hnrnpk-015 retained_intron Mus_musculus 0 874
ENSMUST00000176797 Hnrnpk-021 protein_coding Mus_musculus 0 815
ENSMUST00000176849 Hnrnpk-012 protein_coding Mus_musculus 0 795
ENSMUST00000177051 Hnrnpk-018 retained_intron Mus_musculus 0 760
ENSMUST00000176888 Hnrnpk-016 retained_intron Mus_musculus 0 697
ENSMUST00000177377 Hnrnpk-013 retained_intron Mus_musculus 0 684
ENSMUST00000175847 Hnrnpk-011 protein_coding Mus_musculus 0 595
ENSMUST00000176269 Hnrnpk-006 retained_intron Mus_musculus 0 503
ENSMUST00000176725 Hnrnpk-017 retained_intron Mus_musculus 0 492
ENSMUST00000177060 Hnrnpk-010 protein_coding Mus_musculus 0 490
ENSMUST00000176359 Hnrnpk-019 retained_intron Mus_musculus 0 483
ENSMUST00000176558 Hnrnpk-007 protein_coding Mus_musculus 0 433
ENSMUST00000175939 Hnrnpk-003 retained_intron Mus_musculus 0 350
ENSMUST00000118460 Gm14542-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000177117 Hnrnpk-005 protein_coding Mus_musculus 0 200

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