C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472778 HNRNPK-008 ENSG00000165119 9606 - 9:83972844-83980616 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLungMuscleENST00000472778
Transcript ID Brain Colon Kidney Lung Muscle
ENST00000472778 31.224±0.00 38.996±0.00 39.870±0.00 42.765±0.00 15.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007C CIL_00007C_0002 CGP 9:83938311-83980616
CIL_00007B CIL_00007B_0002 CGP 9:83968083-84004074

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175847 Hnrnpk-011 protein_coding Mus_musculus 0 944
ENSMUST00000176305 Hnrnpk-014 protein_coding Mus_musculus 0 595
ENSMUST00000176609 Hnrnpk-015 retained_intron Mus_musculus 0 595
ENSMUST00000043269 Hnrnpk-002 protein_coding Mus_musculus 0 595
ENSMUST00000177497 Hnrnpk-004 protein_coding Mus_musculus 0 595
ENSMUST00000116403 Hnrnpk-001 protein_coding Mus_musculus 0 595
ENSMUST00000051522 Gm7964-202 protein_coding Mus_musculus 0 584
ENSMUST00000176269 Hnrnpk-006 retained_intron Mus_musculus 0 422
ENSMUST00000176558 Hnrnpk-007 protein_coding Mus_musculus 0 351
ENSMUST00000177377 Hnrnpk-013 retained_intron Mus_musculus 0 351
ENSMUST00000176849 Hnrnpk-012 protein_coding Mus_musculus 0 351
ENSMUST00000175939 Hnrnpk-003 retained_intron Mus_musculus 0 350
ENSMUST00000176207 Hnrnpk-008 protein_coding Mus_musculus 0 350
ENSMUST00000177019 Hnrnpk-009 protein_coding Mus_musculus 0 350
ENSMUST00000176725 Hnrnpk-017 retained_intron Mus_musculus 0 344
ENSMUST00000176888 Hnrnpk-016 retained_intron Mus_musculus 0 344
ENSMUST00000042280 Gm7964-201 protein_coding Mus_musculus 0 339
ENSMUST00000177060 Hnrnpk-010 protein_coding Mus_musculus 0 300
ENSMUST00000177117 Hnrnpk-005 protein_coding Mus_musculus 0 195

Loading