C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: one cut domain, family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051773 Onecut3-001 ENSMUSG00000045518 10090 + 10:80494835-80517276 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000051773
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000051773 0.005±0.00 1.993±1.56 0.013±0.01 0.024±0.00 0.013±0.00 0.015±0.01 0.005±0.00 0.017±0.01 0.005±0.00 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000188 CIL_000188_0002 CGP 10:80409514-80517276
CIL_0005ZE CIL_0005ZE_0003 CGP 10:80494835-80539124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0031018 TAS endocrine pancreas development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129811 ONECUT3 (2 of 2)-201 protein_coding Danio_rerio 0 455
ENSDART00000127348 ONECUT2-201 protein_coding Danio_rerio 0 409
ENSDART00000151049 ONECUT2-001 protein_coding Danio_rerio 0 409
ENST00000305901 ONECUT1-001 protein_coding Homo_sapiens 0 392
ENST00000382349 ONECUT3-001 protein_coding Homo_sapiens 0 1550
ENST00000491143 ONECUT2-001 protein_coding Homo_sapiens 0 416
ENST00000570208 ONECUT1-004 nonsense_mediated_decay Homo_sapiens 0 222

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