C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 138
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052396 Rnf138-201 ENSMUSG00000024317 10090 + 18:21001341-21028223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052396
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052396 1.820±0.35 2.819±0.40 2.931±1.78 1.475±0.16 1.558±0.01 0.371±0.07 0.880±0.28 1.127±0.32 1.406±0.31 0.852±0.06 3.452±1.95 2.593±1.40 14.424±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X2 CIL_0003X2_0002 CGP 18:20944625-21028223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257190 RNF138-002 protein_coding Homo_sapiens 0 623
ENST00000261593 RNF138-001 protein_coding Homo_sapiens 0 1218
ENST00000502765 RNF138P1-001 processed_pseudogene Homo_sapiens 0 754
ENST00000577999 RNF138-009 protein_coding Homo_sapiens 0 303
ENST00000578107 RNF138-007 protein_coding Homo_sapiens 0 507
ENST00000578914 RNF138-004 protein_coding Homo_sapiens 0 412
ENST00000580499 RNF138-008 protein_coding Homo_sapiens 0 603
ENST00000583733 RNF138-005 retained_intron Homo_sapiens 0 603
ENST00000585103 RNF138-003 processed_transcript Homo_sapiens 6e-28 128

Loading