C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: doublesex and mab-3 related transcription factor like family A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052478 Dmrta1-001 ENSMUSG00000043753 10090 + 4:89688198-89694772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000052478
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000052478 0.297±0.23 0.197±0.12 0.021±0.01 0.256±0.19 0.082±0.04 0.110±0.08 0.011±0.00 0.025±0.02 0.033±0.03 0.006±0.00 1.746±0.83 0.005±0.00 2.763±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YE CIL_0007YE_0002 VISTA 4:89088208-89693783
CIL_0007U7 CIL_0007U7_0002 VISTA 4:89092538-89696083
CIL_0007YH CIL_0007YH_0002 VISTA 4:89093251-89700067
CIL_0007YG CIL_0007YG_0002 VISTA 4:89099831-89706701
CIL_0007U8 CIL_0007U8_0002 VISTA 4:89105459-89706480
CIL_00095D CIL_00095D_0002 VISTA 4:89105812-89710925
CIL_000945 CIL_000945_0002 VISTA 4:89116711-89721138
CIL_0008WE CIL_0008WE_0002 VISTA 4:89121046-89725353
CIL_0007YC CIL_0007YC_0002 VISTA 4:89125337-89732294
CIL_0008P9 CIL_0008P9_0002 VISTA 4:89126411-89729104
CIL_00099P CIL_00099P_0002 VISTA 4:89127311-89729167
CIL_00099O CIL_00099O_0002 VISTA 4:89131159-89734211
CIL_0008TL CIL_0008TL_0002 VISTA 4:89131716-89739478
CIL_00094Y CIL_00094Y_0002 VISTA 4:89144756-89747133
CIL_0008SY CIL_0008SY_0002 VISTA 4:89146082-89752900
CIL_0008T0 CIL_0008T0_0002 VISTA 4:89152132-89755541
CIL_00085X CIL_00085X_0002 VISTA 4:89155335-89760083
CIL_00094Z CIL_00094Z_0002 VISTA 4:89157896-89760037
CIL_0008GG CIL_0008GG_0002 VISTA 4:89168919-89771433
CIL_00074F CIL_00074F_0002 CGP 4:89306289-89694772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001541 IMP ovarian follicle development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0042803 IDA protein homodimerization activity
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0060179 IMP male mating behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325870 DMRTA1-001 protein_coding Homo_sapiens 0 913
ENST00000404795 DMRTA2-002 protein_coding Homo_sapiens 0 259
ENST00000418121 DMRTA2-001 protein_coding Homo_sapiens 0 259

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