C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor, suppressor of white-apricot homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053737 Sfswap-201 ENSMUSG00000029439 10090 + 5:129501231-129571383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053737 12.459±4.01 18.826±5.20 12.010±2.27 24.881±5.45 13.103±6.15 14.932±5.04 4.606±1.12 6.557±2.36 8.891±4.85 19.220±4.03 3.996±1.09 20.931±9.05 10.968±4.88 7.247±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042Y CIL_00042Y_0002 CGP 5:129096750-129571383
CIL_00042X CIL_00042X_0002 CGP 5:129501231-129608875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261674 SFSWAP-001 protein_coding Homo_sapiens 0 2806
ENST00000535202 SFSWAP-011 retained_intron Homo_sapiens 0 422
ENST00000535236 SFSWAP-004 retained_intron Homo_sapiens 0 1646
ENST00000535399 SFSWAP-006 retained_intron Homo_sapiens 0 599
ENST00000538548 SFSWAP-005 nonsense_mediated_decay Homo_sapiens 0 1919
ENST00000539506 SFSWAP-009 processed_transcript Homo_sapiens 0 399
ENST00000540469 SFSWAP-007 retained_intron Homo_sapiens 0 379
ENST00000541286 SFSWAP-003 protein_coding Homo_sapiens 0 2364

Loading