C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autocrine motility factor receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053766 Amfr-001 ENSMUSG00000031751 10090 - 8:93971588-94012663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053766 45.703±14.33 145.656±15.37 19.828±1.00 22.409±8.84 46.985±5.27 65.735±11.43 33.681±4.66 63.040±14.70 53.260±33.23 62.135±3.28 13.544±1.76 67.316±28.35 14.218±11.83 23.005±9.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048U CIL_00048U_0002 CGP 8:93809966-94012663
CIL_00048T CIL_00048T_0002 CGP 8:93971588-94037021

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000209 ISS protein polyubiquitination
GO:0000836 IEA Hrd1p ubiquitin ligase complex
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007568 IEA aging
GO:0007611 IEA learning or memory
GO:0008270 IEA zinc ion binding
GO:0009987 TAS cellular process
GO:0016020 IEA membrane
GO:0016874 IEA ligase activity
GO:0030176 ISS integral component of endoplasmic reticulum membrane
GO:0030425 IEA dendrite
GO:0030426 IEA growth cone
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0030968 IEA endoplasmic reticulum unfolded protein response
GO:0043025 IEA neuronal cell body
GO:0043234 ISO protein complex
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051259 IEA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290649 AMFR-001 protein_coding Homo_sapiens 0 2813
ENST00000492830 AMFR-002 protein_coding Homo_sapiens 0 935
ENST00000563285 AMFR-012 retained_intron Homo_sapiens 0 431
ENST00000563664 AMFR-007 protein_coding Homo_sapiens 0 704
ENST00000565445 AMFR-005 protein_coding Homo_sapiens 0 946
ENST00000566757 AMFR-004 retained_intron Homo_sapiens 0 383
ENST00000567738 AMFR-009 protein_coding Homo_sapiens 0 525
ENST00000568325 AMFR-003 retained_intron Homo_sapiens 0 601
ENST00000568657 AMFR-006 processed_transcript Homo_sapiens 0 372

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