C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoskeleton-associated protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053871 Ckap4-201 ENSMUSG00000046841 10090 - 10:84526305-84533888 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053871
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053871 16.606±10.11 10.468±0.93 22.221±2.06 14.992±8.01 9.727±2.28 16.991±4.21 9.092±0.74 3.759±0.75 3.633±2.95 14.430±1.35 1.971±0.34 48.364±12.83 48.174±18.89 25.900±10.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021I CIL_00021I_0002 CGP 10:84370905-84534036
CIL_0005RH CIL_0005RH_0002 CGP 10:84526305-84614359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378026 CKAP4-001 protein_coding Homo_sapiens 0 1417
ENST00000552828 CKAP4-007 processed_transcript Homo_sapiens 0 435

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