C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054145 Dcaf5-201 ENSMUSG00000049106 10090 - 12:80335847-80436601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054145 12.925±1.36 14.826±1.54 9.141±0.06 18.850±2.86 12.855±2.94 12.194±3.12 8.418±0.30 8.178±1.95 5.923±3.19 12.079±1.06 7.542±2.33 16.900±4.69 7.783±2.96 36.242±15.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JZ CIL_0001JZ_0003 CGP 12:80167542-80436601
CIL_0002CH CIL_0002CH_0002 CGP 12:80335847-80498135

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0016567 IEA protein ubiquitination
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084867 dcaf5-201 protein_coding Danio_rerio 0 726
ENST00000341516 DCAF5-001 protein_coding Homo_sapiens 0 3801
ENST00000389997 DCAF5-003 protein_coding Homo_sapiens 0 1362
ENST00000553293 DCAF5-009 processed_transcript Homo_sapiens 0 645
ENST00000553943 DCAF5-006 retained_intron Homo_sapiens 0 555
ENST00000554215 DCAF5-005 protein_coding Homo_sapiens 0 3271
ENST00000554681 DCAF5-007 protein_coding Homo_sapiens 0 946
ENST00000556111 DCAF5-008 nonsense_mediated_decay Homo_sapiens 0 937
ENST00000556847 DCAF5-004 protein_coding Homo_sapiens 0 3131
ENST00000557386 DCAF5-002 protein_coding Homo_sapiens 0 3522

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