C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007219-ENSDARG00000060320 CGP 7955 13:36722687-36840775
GeneTranscriptPositionBiotype
ENSDARG00000007219 (actn1)
actinin, alpha 1 		ENSDART00000100217 (actn1-201) 36722691-36793090 protein_coding
ENSDART00000123678 (actn1-202) 36722691-36793090 protein_coding
ENSDART00000133740 (actn1-002) 36722690-36793090 nonsense_mediated_decay
ENSDART00000133858 (actn1-003) 36723030-36732498 nonsense_mediated_decay
ENSDART00000135741 (actn1-004) 36722963-36724203 retained_intron
ENSDART00000140243 (actn1-001) 36722687-36793101 protein_coding
ENSDARG00000060320 (dcaf5)
ddb1 and cul4 associated factor 5 		ENSDART00000084867 (dcaf5-201) 36810924-36840775 protein_coding
ENSDART00000135804 (dcaf5-001) 36810912-36820520 protein_coding
CIL_0001JZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072110-ENSG00000139990 CGP 9606 14:68874143-69153150
GeneTranscriptPositionBiotype
ENSG00000072110 (ACTN1)
actinin, alpha 1 		ENST00000193403 (ACTN1-001) 68874143-68979440 protein_coding
ENST00000376839 (ACTN1-007) 68874783-68977566 protein_coding
ENST00000394419 (ACTN1-005) 68874323-68979239 protein_coding
ENST00000438964 (ACTN1-002) 68874686-68979262 protein_coding
ENST00000538545 (ACTN1-006) 68874859-68979076 protein_coding
ENST00000544964 (ACTN1-019) 68879046-68890142 protein_coding
ENST00000553290 (ACTN1-020) 68879049-68884303 protein_coding
ENST00000553370 (ACTN1-015) 68904702-68977654 protein_coding
ENST00000553659 (ACTN1-013) 68925559-68978269 protein_coding
ENST00000553779 (ACTN1-016) 68910020-68947548 protein_coding
ENST00000553882 (ACTN1-009) 68874323-68879022 retained_intron
ENST00000554158 (ACTN1-017) 68902543-68921359 processed_transcript
ENST00000554508 (ACTN1-018) 68893703-68921038 processed_transcript
ENST00000555075 (ACTN1-022) 68874786-68882567 protein_coding
ENST00000555616 (ACTN1-012) 68892228-68978289 protein_coding
ENST00000556083 (ACTN1-008) 68874318-68888263 retained_intron
ENST00000556203 (ACTN1-010) 68973781-68979031 processed_transcript
ENST00000556343 (ACTN1-021) 68883265-68884295 processed_transcript
ENST00000556432 (ACTN1-023) 68879864-68881122 retained_intron
ENST00000556433 (ACTN1-011) 68893665-68978735 protein_coding
ENST00000556571 (ACTN1-014) 68910022-68978240 protein_coding
ENSG00000139990 (DCAF5)
DDB1 and CUL4 associated factor 5 		ENST00000341516 (DCAF5-001) 69050881-69153126 protein_coding
ENST00000389997 (DCAF5-003) 69089204-69152983 protein_coding
ENST00000553293 (DCAF5-009) 69055210-69118194 processed_transcript
ENST00000553943 (DCAF5-006) 69119098-69153150 retained_intron
ENST00000554215 (DCAF5-005) 69051855-69152599 protein_coding
ENST00000554681 (DCAF5-007) 69091674-69153040 protein_coding
ENST00000556111 (DCAF5-008) 69062428-69152999 nonsense_mediated_decay
ENST00000556847 (DCAF5-004) 69053802-69152609 protein_coding
ENST00000557386 (DCAF5-002) 69053825-69153003 protein_coding
ENSG00000206768 (Y_RNA)
Y RNA 		ENST00000384041 (Y_RNA.1-621) 69143852-69143953 misc_RNA
ENSG00000242293 (RP11-226F19.1)
 ENST00000465274 (RP11-226F19.1-001) 69023150-69023308 processed_pseudogene
ENSG00000258531 (BANF1P1)
barrier to autointegration factor 1 pseudogene 1 		ENST00000553684 (BANF1P1-001) 68936602-68936864 processed_pseudogene
ENSG00000259062 (ACTN1-AS1)
ACTN1 antisense RNA 1 		ENST00000553944 (ACTN1-AS1-001) 68980041-68981562 antisense
ENST00000553961 (ACTN1-AS1-002) 68979682-68987463 antisense
ENSG00000259165 (DDX18P1)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 1 		ENST00000556558 (DDX18P1-001) 69083398-69085389 processed_pseudogene
CIL_0001JZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015143-ENSMUSG00000049106 CGP 10090 12:80167542-80436601
GeneTranscriptPositionBiotype
ENSMUSG00000015143 (Actn1)
actinin, alpha 1 		ENSMUST00000021554 (Actn1-201) 80167542-80260371 protein_coding
ENSMUST00000167327 (Actn1-202) 80168322-80260091 protein_coding
ENSMUSG00000049106 (Dcaf5)
DDB1 and CUL4 associated factor 5 		ENSMUST00000054145 (Dcaf5-201) 80335847-80436601 protein_coding
ENSMUSG00000088158 (Scarna3b)
small Cajal body-specific RNA 3B 		ENSMUST00000157533 (Scarna3b-201) 80391613-80391751 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JZ_0001ENSDARG00000007219ENSDART00000100217ENSDART00000123678ENSDART00000133740ENSDART00000133858ENSDART00000135741ENSDART00000140243ENSDARG00000060320ENSDART00000084867ENSDART00000135804CIL_0001JZ_0002ENSG00000072110ENST00000193403ENST00000376839ENST00000394419ENST00000438964ENST00000538545ENST00000544964ENST00000553290ENST00000553370ENST00000553659ENST00000553779ENST00000553882ENST00000554158ENST00000554508ENST00000555075ENST00000555616ENST00000556083ENST00000556203ENST00000556343ENST00000556432ENST00000556433ENST00000556571ENSG00000139990ENST00000341516ENST00000389997ENST00000553293ENST00000553943ENST00000554215ENST00000554681ENST00000556111ENST00000556847ENST00000557386ENSG00000206768ENST00000384041ENSG00000242293ENST00000465274ENSG00000258531ENST00000553684ENSG00000259062ENST00000553944ENST00000553961ENSG00000259165ENST00000556558CIL_0001JZ_0003ENSMUSG00000015143ENSMUST00000021554ENSMUST00000167327ENSMUSG00000049106ENSMUST00000054145ENSMUSG00000088158ENSMUST00000157533
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JZ_0001ENSDARG00000007219ENSDART00000100217ENSDART00000123678ENSDART00000133740ENSDART00000133858ENSDART00000140243ENSDARG00000060320ENSDART00000084867ENSDART00000135804CIL_0001JZ_0002ENSG00000072110ENST00000193403ENST00000376839ENST00000394419ENST00000438964ENST00000538545ENST00000553882ENSG00000139990ENST00000341516ENST00000389997ENST00000554215ENST00000556847ENST00000557386ENSG00000206768ENST00000384041ENSG00000242293ENST00000465274ENSG00000258531ENST00000553684ENSG00000259062ENST00000553944ENST00000553961ENSG00000259165ENST00000556558CIL_0001JZ_0003ENSMUSG00000015143ENSMUST00000021554ENSMUST00000167327ENSMUSG00000049106ENSMUST00000054145ENSMUSG00000088158ENSMUST00000157533
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007219 ENSDART00000100217 N/A N/A N/A N/A N/A N/A 6.376±0.00 24.222±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000123678 N/A N/A N/A 2.832±0.00 N/A N/A 6.471±0.51 2.544±0.00 N/A N/A 2.146±0.00 N/A N/A N/A
ENSDART00000133740 N/A N/A N/A N/A N/A N/A 2.940±0.00 12.321±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000133858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.651±0.00 N/A N/A N/A
ENSDART00000135741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140243 N/A N/A N/A 6.491±1.90 N/A N/A 2.888±0.27 3.435±0.00 1.243±0.00 N/A 5.897±0.00 N/A N/A N/A
ENSDARG00000060320 ENSDART00000084867 N/A N/A N/A 6.480±0.39 N/A N/A 4.868±0.70 3.208±0.00 0.656±0.00 N/A 3.749±0.00 N/A N/A N/A
ENSDART00000135804 N/A N/A N/A 1.313±0.00 N/A N/A 2.411±0.59 11.300±5.63 0.490±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072110 ENST00000193403 7.681±0.00 49.015±0.00 4.412±0.00 8.185±0.27 24.584±2.44 46.638±33.77 5.959±3.68 8.886±2.64 36.321±0.00 18.241±12.72 0.938±0.44 33.523±24.85 29.665±9.99 13.578±9.38
ENST00000376839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.146±0.00 2.969±0.00
ENST00000394419 9.511±0.00 32.861±0.00 N/A N/A 19.521±0.00 54.483±0.00 6.040±0.00 15.632±0.00 20.645±0.00 39.663±0.00 4.140±0.00 8.461±0.00 15.539±0.50 21.904±0.00
ENST00000438964 30.447±0.00 89.458±0.00 N/A 13.032±0.00 46.574±0.00 67.105±0.00 11.277±0.00 12.574±0.00 27.998±0.00 49.721±0.00 3.589±2.61 36.380±17.44 24.170±6.68 18.124±13.43
ENST00000538545 N/A N/A N/A 2.336±0.00 17.563±0.00 5.752±0.00 1.887±0.00 1.758±0.00 N/A 5.569±0.00 1.659±0.00 6.214±0.00 N/A N/A
ENST00000544964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.080±0.00 N/A N/A
ENST00000554158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139990 ENST00000341516 1.511±0.00 1.759±0.00 N/A 1.746±0.35 1.000±0.00 2.047±0.00 3.638±3.31 1.140±0.00 0.992±0.00 1.154±0.20 10.711±9.23 2.089±1.15 1.073±0.17 5.730±1.28
ENST00000389997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A
ENST00000553293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554215 6.848±0.00 10.074±0.00 1.702±0.00 2.335±0.00 3.850±1.95 5.331±2.72 2.688±0.00 5.727±3.14 3.480±0.00 7.474±0.00 2.685±0.00 5.659±3.10 4.813±0.00 9.104±0.65
ENST00000554681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556847 N/A N/A 3.742±0.00 N/A N/A N/A N/A N/A 1.692±0.00 N/A N/A N/A N/A 10.158±0.00
ENST00000557386 5.284±0.00 N/A N/A 1.240±0.00 2.997±1.44 3.635±1.08 3.121±2.27 1.576±0.00 2.079±0.24 4.853±3.77 1.776±0.00 2.412±0.62 3.679±0.85 21.809±5.13
ENSG00000206768 ENST00000384041 N/A 0.391±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242293 ENST00000465274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.03
ENSG00000258531 ENST00000553684 N/A N/A N/A N/A 0.587±0.00 N/A N/A 0.093±0.00 0.173±0.00 N/A N/A 0.128±0.00 N/A N/A
ENSG00000259062 ENST00000553944 N/A 0.360±0.00 N/A 0.134±0.00 0.612±0.00 0.269±0.00 N/A N/A 0.162±0.00 N/A N/A 0.299±0.01 0.139±0.00 0.319±0.21
ENST00000553961 N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A 0.095±0.00
ENSG00000259165 ENST00000556558 N/A N/A N/A N/A 0.101±0.05 N/A N/A 0.033±0.00 N/A N/A N/A 0.012±0.00 0.019±0.00 0.027±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015143 ENSMUST00000021554 16.160±5.87 3.455±0.56 57.901±6.93 6.016±0.59 11.465±3.33 24.309±3.66 2.325±0.39 5.757±0.85 5.969±3.20 12.850±3.35 0.817±0.40 33.926±6.81 39.849±22.69 1.063±0.30
ENSMUST00000167327 34.405±21.33 1.995±0.08 178.023±34.49 15.834±19.19 10.154±1.68 39.221±6.16 8.129±1.07 6.953±0.68 2.926±1.23 19.952±4.37 1.164±0.37 50.908±13.56 35.183±25.84 2.474±0.80
ENSMUSG00000049106 ENSMUST00000054145 12.925±1.36 14.826±1.54 9.141±0.06 18.850±2.86 12.855±2.94 12.194±3.12 8.418±0.30 8.178±1.95 5.923±3.19 12.079±1.06 7.542±2.33 16.900±4.69 7.783±2.96 36.242±15.69
ENSMUSG00000088158 ENSMUST00000157533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.015±3.69 N/A

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