C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 5215
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054380 Gm5215-201 ENSMUSG00000050978 10090 - 15:54311961-54312365 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000054380
Transcript ID Liver
ENSMUST00000054380 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I4 CIL_0005I4_0002 CGP 15:54250619-54466358

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330244 RPS17-001 protein_coding Homo_sapiens 0 414
ENST00000405686 RP11-448N11.2-001 unprocessed_pseudogene Homo_sapiens 0 209
ENST00000423610 SC22CB-1E7.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000450126 RP11-277B15.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000461663 RPS17P2-001 processed_pseudogene Homo_sapiens 0 359
ENST00000558397 RPS17-009 non_stop_decay Homo_sapiens 0 335
ENST00000559273 RPS17-006 retained_intron Homo_sapiens 4.06377e-44 182
ENST00000559776 RPS17-008 retained_intron Homo_sapiens 0 279
ENST00000560229 RPS17-002 retained_intron Homo_sapiens 0 411
ENST00000560612 RPS17-003 retained_intron Homo_sapiens 0 333
ENST00000560639 RPS17-007 retained_intron Homo_sapiens 0 283
ENST00000561068 RPS17-010 nonsense_mediated_decay Homo_sapiens 6.99949e-42 174
ENST00000561157 RPS17-005 protein_coding Homo_sapiens 0 337
ENST00000561440 RPS17-004 retained_intron Homo_sapiens 1.99965e-42 178
ENST00000617731 RPS17L-201 protein_coding Homo_sapiens 0 414

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