C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330244 RPS17-001 ENSG00000182774 9606 - 15:82536753-82540564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330244 538.441±0.00 767.596±0.00 41.683±0.00 197.696±44.21 324.648±155.39 487.237±335.18 167.042±106.79 320.138±149.69 332.355±166.13 672.760±556.48 344.435±220.38 1109.472±934.32 733.968±422.85 273.253±199.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA:IC translation
GO:0006413 NAS translational initiation
GO:0006414 IBA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0034101 IMP erythrocyte homeostasis
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080813 Rps17-001 protein_coding Mus_musculus 0 564
ENSMUST00000134425 Rps17-002 retained_intron Mus_musculus 0 503
ENSMUST00000119571 Gm14586-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000119032 Gm12034-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000156346 Rps17-003 retained_intron Mus_musculus 0 449
ENSMUST00000054380 Gm5215-201 processed_pseudogene Mus_musculus 0 414
ENSMUST00000130487 Rps17-005 processed_transcript Mus_musculus 0 291
ENSMUST00000138936 Rps17-004 processed_transcript Mus_musculus 0 246

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