C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423610 SC22CB-1E7.1-001 ENSG00000232346 9606 + 22:32039490-32039896 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423610
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423610 0.125±0.00 0.135±0.00 0.096±0.00 0.093±0.00 0.255±0.00 0.084±0.00 0.235±0.00 0.292±0.00 0.183±0.00 0.608±0.00 0.606±0.38 0.096±0.04 0.326±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EV CIL_0006EV_0002 CGP 22:31944461-32113029

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134425 Rps17-002 retained_intron Mus_musculus 0 472
ENSMUST00000080813 Rps17-001 protein_coding Mus_musculus 0 472
ENSMUST00000119032 Gm12034-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000054380 Gm5215-201 processed_pseudogene Mus_musculus 0 390
ENSMUST00000156346 Rps17-003 retained_intron Mus_musculus 0 390
ENSMUST00000121431 Gm12422-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000138936 Rps17-004 processed_transcript Mus_musculus 0 202
ENSMUST00000122382 Gm11188-001 processed_pseudogene Mus_musculus 5e-22 108

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