C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase A2, group IVF
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054651 Pla2g4f-001 ENSMUSG00000046971 10090 - 2:120299966-120314165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054651
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054651 0.059±0.01 0.367±0.00 0.023±0.00 0.313±0.11 4.080±0.68 0.086±0.03 0.042±0.03 2.132±1.75 0.068±0.05 0.265±0.12 7.169±4.27 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PO CIL_0005PO_0002 CGP 2:120265595-120314165
CIL_0005PN CIL_0005PN_0002 CGP 2:120299957-120353137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001516 IDA prostaglandin biosynthetic process
GO:0004622 IDA lysophospholipase activity
GO:0004623 IDA phospholipase A2 activity
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0005829 IDA cytosol
GO:0009395 IEA phospholipid catabolic process
GO:0015908 IDA fatty acid transport
GO:0031982 IDA vesicle
GO:0032587 IDA ruffle membrane
GO:0046872 IEA metal ion binding
GO:0047498 IDA calcium-dependent phospholipase A2 activity
GO:0050482 IDA arachidonic acid secretion
GO:0071236 IDA cellular response to antibiotic
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290497 PLA2G4F-003 nonsense_mediated_decay Homo_sapiens 0 1716
ENST00000397272 PLA2G4F-001 protein_coding Homo_sapiens 0 1818
ENST00000561893 PLA2G4F-008 retained_intron Homo_sapiens 0 259
ENST00000562320 PLA2G4F-005 nonsense_mediated_decay Homo_sapiens 2e-21 108
ENST00000569985 PLA2G4F-002 nonsense_mediated_decay Homo_sapiens 0 1417

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