C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005PN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168907-ENSG00000166887 CGP 9606 15:42139034-42208316
GeneTranscriptPositionBiotype
ENSG00000166887 (VPS39)
vacuolar protein sorting 39 homolog (S. cerevisiae) 		ENST00000318006 (VPS39-001) 42158701-42208316 protein_coding
ENST00000348544 (VPS39-002) 42160754-42208153 protein_coding
ENST00000561797 (VPS39-008) 42164605-42165753 retained_intron
ENST00000561818 (VPS39-009) 42163561-42164726 retained_intron
ENST00000562258 (VPS39-003) 42158716-42166219 retained_intron
ENST00000562662 (VPS39-011) 42161724-42162672 retained_intron
ENST00000563692 (VPS39-010) 42164785-42166875 processed_transcript
ENST00000564994 (VPS39-013) 42160431-42162052 nonsense_mediated_decay
ENST00000568029 (VPS39-006) 42169851-42179103 retained_intron
ENST00000568357 (VPS39-004) 42191261-42208307 processed_transcript
ENST00000568755 (VPS39-012) 42161719-42162557 retained_intron
ENST00000570023 (VPS39-007) 42173637-42178338 retained_intron
ENST00000570062 (VPS39-005) 42184192-42191170 retained_intron
ENST00000614932 (VPS39-014) 42158713-42161547 retained_intron
ENSG00000168907 (PLA2G4F)
phospholipase A2, group IVF 		ENST00000290497 (PLA2G4F-003) 42141204-42156611 nonsense_mediated_decay
ENST00000397272 (PLA2G4F-001) 42139034-42156636 protein_coding
ENST00000561627 (PLA2G4F-007) 42150665-42156609 nonsense_mediated_decay
ENST00000561893 (PLA2G4F-008) 42146675-42147733 retained_intron
ENST00000562320 (PLA2G4F-005) 42141198-42145587 nonsense_mediated_decay
ENST00000565553 (PLA2G4F-006) 42154122-42156636 nonsense_mediated_decay
ENST00000569985 (PLA2G4F-002) 42141209-42156618 nonsense_mediated_decay
CIL_0005PN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046971-ENSMUSG00000027291 CGP 10090 2:120299957-120353137
GeneTranscriptPositionBiotype
ENSMUSG00000027291 (Vps39)
vacuolar protein sorting 39 (yeast) 		ENSMUST00000028752 (Vps39-002) 120316461-120353125 protein_coding
ENSMUST00000102501 (Vps39-001) 120316461-120353137 protein_coding
ENSMUST00000126526 (Vps39-007) 120348467-120353125 processed_transcript
ENSMUST00000129857 (Vps39-003) 120316811-120353121 processed_transcript
ENSMUST00000132476 (Vps39-009) 120325868-120333433 retained_intron
ENSMUST00000133260 (Vps39-010) 120318027-120319582 retained_intron
ENSMUST00000138854 (Vps39-008) 120338466-120344207 processed_transcript
ENSMUST00000145193 (Vps39-005) 120319846-120323490 retained_intron
ENSMUST00000147085 (Vps39-004) 120321855-120353109 retained_intron
ENSMUST00000156296 (Vps39-006) 120343254-120353121 processed_transcript
ENSMUSG00000046971 (Pla2g4f)
phospholipase A2, group IVF 		ENSMUST00000054651 (Pla2g4f-001) 120299966-120314165 protein_coding
ENSMUST00000142183 (Pla2g4f-002) 120299957-120312377 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005PN_0001ENSG00000166887ENST00000318006ENST00000348544ENST00000561797ENST00000561818ENST00000562258ENST00000562662ENST00000563692ENST00000564994ENST00000568029ENST00000568357ENST00000568755ENST00000570023ENST00000570062ENST00000614932ENSG00000168907ENST00000290497ENST00000397272ENST00000561627ENST00000561893ENST00000562320ENST00000565553ENST00000569985CIL_0005PN_0002ENSMUSG00000027291ENSMUST00000028752ENSMUST00000102501ENSMUST00000126526ENSMUST00000129857ENSMUST00000132476ENSMUST00000133260ENSMUST00000138854ENSMUST00000145193ENSMUST00000147085ENSMUST00000156296ENSMUSG00000046971ENSMUST00000054651ENSMUST00000142183
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005PN_0001ENSG00000166887ENST00000318006ENST00000348544ENST00000562258ENST00000568357ENSG00000168907ENST00000290497ENST00000397272ENST00000561627ENST00000561893ENST00000562320ENST00000569985CIL_0005PN_0002ENSMUSG00000027291ENSMUST00000028752ENSMUST00000102501ENSMUST00000129857ENSMUSG00000046971ENSMUST00000054651ENSMUST00000142183
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166887 ENST00000318006 12.321±0.00 13.274±0.00 2.939±0.00 12.455±5.32 9.045±6.31 5.942±3.13 7.030±5.25 11.872±0.00 3.513±0.43 4.551±0.78 N/A 7.717±5.87 9.685±2.52 13.407±1.46
ENST00000348544 N/A N/A N/A 2.636±0.00 2.568±0.00 3.026±0.00 3.023±0.00 2.001±0.00 2.969±0.00 2.626±0.00 2.006±0.00 3.367±0.00 N/A N/A
ENST00000561797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562258 N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A
ENST00000562662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568357 N/A N/A N/A N/A N/A N/A N/A 4.930±0.00 11.074±0.00 9.389±0.00 N/A 9.703±0.00 N/A N/A
ENST00000568755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168907 ENST00000290497 0.029±0.00 N/A 0.514±0.00 0.005±0.00 N/A N/A 0.025±0.00 1.296±0.00 0.026±0.00 1.077±0.00 2.707±0.00 2.895±2.30 0.088±0.04 N/A
ENST00000397272 N/A 0.022±0.00 N/A 0.017±0.00 N/A N/A 0.150±0.12 1.408±0.00 0.021±0.00 N/A N/A 1.304±0.00 N/A N/A
ENST00000561627 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561893 N/A N/A N/A N/A N/A N/A N/A N/A 0.168±0.00 N/A N/A N/A 0.108±0.00 N/A
ENST00000562320 0.012±0.00 N/A N/A N/A N/A 0.991±0.45 0.378±0.00 N/A 0.202±0.00 0.801±0.00 N/A 2.899±2.89 0.168±0.13 0.071±0.00
ENST00000565553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569985 0.005±0.00 N/A N/A 0.005±0.00 N/A N/A 1.327±0.00 2.835±0.00 N/A 0.813±0.00 0.912±0.00 0.869±0.00 N/A 0.205±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027291 ENSMUST00000028752 4.367±1.58 2.548±0.38 7.289±0.39 10.575±4.24 3.527±0.63 2.686±0.00 3.796±0.43 5.295±0.90 3.896±0.95 3.381±0.67 0.982±0.15 5.894±3.27 5.343±2.68 2.477±0.81
ENSMUST00000102501 1.746±0.05 N/A 3.159±0.35 N/A N/A 1.820±0.53 0.920±0.00 N/A 1.346±0.13 N/A 4.601±0.37 4.114±0.70 1.483±0.32 0.794±0.10
ENSMUST00000126526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129857 8.344±1.59 15.517±3.11 N/A 5.290±0.46 9.563±0.83 6.279±1.51 3.483±0.35 3.985±2.13 2.394±1.16 9.503±1.44 N/A 11.206±4.03 2.221±0.67 2.075±0.80
ENSMUST00000132476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046971 ENSMUST00000054651 0.059±0.01 N/A 0.367±0.00 0.023±0.00 0.313±0.11 4.080±0.68 N/A 0.086±0.03 0.042±0.03 2.132±1.75 0.068±0.05 0.265±0.12 7.169±4.27 0.041±0.00
ENSMUST00000142183 0.027±0.00 0.025±0.00 N/A 0.023±0.00 0.397±0.00 N/A 0.036±0.03 0.023±0.00 0.033±0.03 N/A 0.022±0.00 0.367±0.25 6.626±6.46 0.161±0.03

Loading